PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00005210-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

HB-other

Protein Properties

Length: 166aa MW: 19230.2 Da PI: 6.2837

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00005210-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	24.8	3.8e-08	8	50	11	53
HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 +e+ ++F +n ps + L+k+l+L+ + V +WF+N R+ PSME_00005210-RA 8 AVERFRQVFVENELPSMPYKPVLSKQLDLPYQHVHMWFKNARY 50 67788999*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.608	1	55	IPR001356	Homeobox domain
CDD	cd00086	0.00189	2	56	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.9E-7	3	49	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.7E-8	4	58	IPR009057	Homeodomain-like
Pfam	PF00046	1.1E-5	8	50	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MSRLPTNAVE RFRQVFVENE LPSMPYKPVL SKQLDLPYQH VHMWFKNARY MSLKKKNLNH 60 LKESVAPIIY ANTRRLKVES SKSTSQIKEP DDASNSYLTE MEELGNIELK LEILRNILET 120 VCPEEGVDFS NDKNPEGITN LLSEELLMYV PVVELREKIL QVAPAR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.1	3e-15	pathogenesis related homeodomain protein A