PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00005225-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C3H
Protein Properties Length: 794aa    MW: 86415.7 Da    PI: 6.38
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00005225-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH246.9e-08486507527
                       --SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                       lCr++a+ G+C +G++C+F+H++
  PSME_00005225-RA 486 LCRYHAQ-GFCGRGESCPFSHSQ 507
                       8**9999.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.361481508IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-4482507IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5484506IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4486508IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-5486507IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:1.25.10.103.6E-51611784IPR011989Armadillo-like helical
PROSITE profilePS5030342.114612794IPR033133Pumilio homology domain
SuperFamilySSF483711.53E-47636784IPR016024Armadillo-type fold
PROSITE profilePS503028.477639674IPR001313Pumilio RNA-binding repeat
SMARTSM000250.001639674IPR001313Pumilio RNA-binding repeat
PfamPF008061.7E-4643673IPR001313Pumilio RNA-binding repeat
PROSITE profilePS5030212.63675710IPR001313Pumilio RNA-binding repeat
PfamPF008061.0E-10675709IPR001313Pumilio RNA-binding repeat
SMARTSM000252.7E-10675710IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503028.827711749IPR001313Pumilio RNA-binding repeat
SMARTSM000253.3714749IPR001313Pumilio RNA-binding repeat
PfamPF008062.3E-5717746IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503027.987751786IPR001313Pumilio RNA-binding repeat
PfamPF008063.1E-6751776IPR001313Pumilio RNA-binding repeat
SMARTSM000254.5E-4751786IPR001313Pumilio RNA-binding repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    Send to blast
MKGGKEQDDE EFEMLLGEIP SATAAPPHLE EVQRTDESPK REAILLQQNA RKSSTPETYD  60
DFYQDYQGEK NLSASPGGTI VSVSPISSGC FPAFYGGLSF NGSGSGSSLQ LQAEQQHTSV  120
QGPVHTETNT EQGQLQSNVS IHHHGIALPT KQIFVDNQAL TTAFGNLNFK EDKVLGQGIQ  180
TSGQPGDGRY GSPVSANAQA PVIAAKVYSH FDVATTSVPG QLNGVGSLNS LGSPSNASLS  240
NVNVHGIRYP SQHKNLTGFF QGTGNDTSNP AMKKLLKYNG YGTNTCGNNL GFPMDGLNVE  300
SYDPQRPIPL YSAATAPTPE MPGFQILPNA SISAAEVLSP VSGLQQQYYM ETHIGSFIQP  360
QPQQCGPPVP ALHSQINRMH LMWQHIEEER CRRMHQQYML QHIQTQALGH MPNQTAAGIM  420
GGSLDQSFRQ QGVQPSMTIS QLEQPLYKYQ QGLPTVEGDW NANLIPGTVG ASAINFSDFP  480
WQSGNLCRYH AQGFCGRGES CPFSHSQAQM VTSGRISAPS NILTKDPSGA TILNGEEKPV  540
FPEKILTRNR SRGVNTVRTI NLNPAGGRKD SLSNGNGSGR VLSDGHHSSV LQVGSFQLDN  600
QGHSRELSPE NADFELIPRS LSSSQQQQIL LPKYTSLDEV EGRIYCIARD QHGCRFLQKK  660
FDEGRPEDVQ KIFVEIIDHI IELMTDPFGN YLVQKLLEVC NGDQRMQILH AITGKPGELV  720
NISLNMHGTR AVQKLIETLE TPQQISMVTS SLIPGVVTLI KDLNGNHVVQ RCLQCLGDGD  780
RQVISLFPSN GPSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dzs_A5e-3463778430174Pumilio homology domain family member 4
4dzs_B5e-3463778430174Pumilio homology domain family member 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1053610.0BT105361.1 Picea glauca clone GQ02821_H08 mRNA sequence.