PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00005434-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

Whirly

Protein Properties

Length: 106aa MW: 11882.5 Da PI: 4.1824

Description

Whirly family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00005434-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Whirly	21.6	3.6e-07	31	63	107	139
Whirly 107 vnlsvtnslvkgnesfsvPvskaefavlrsllv 139 v l v+ + ++es+s+P++k+efav++s ++ PSME_00005434-RA 31 VLLGVNDRIADVDESVSIPITKGEFAVMQSTFN 63 568899***********************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54447	1.1E-16	30	102	IPR009044	ssDNA-binding transcriptional regulator
Gene3D	G3DSA:2.30.31.10	1.2E-16	33	85	IPR009044	ssDNA-binding transcriptional regulator

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 106 aa Download sequence Send to blast
MWFDTDLRFG SVFFCSDGEP ENVLASSPPR VLLGVNDRIA DVDESVSIPI TKGEFAVMQS 60 TFNFILPYLM GWHAYMDFPK PNESGHLTSG GPIIAKRPDL EWDVPF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1l3a_A	1e-13	33	104	151	220	p24: plant transcriptional regulator PBF-2
1l3a_B	1e-13	33	104	151	220	p24: plant transcriptional regulator PBF-2
1l3a_C	1e-13	33	104	151	220	p24: plant transcriptional regulator PBF-2
1l3a_D	1e-13	33	104	151	220	p24: plant transcriptional regulator PBF-2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF083515	1e-76	EF083515.1 Picea sitchensis clone WS02721_C09 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A9NQE8	2e-36	A9NQE8_PICSI; Uncharacterized protein
STRING	XP_008351051.1	5e-17	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14410.1	8e-19	ssDNA-binding transcriptional regulator