PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00005435-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family Whirly
Protein Properties Length: 252aa    MW: 27893.4 Da    PI: 8.7291
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00005435-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly82.65.3e-2612720922103
            Whirly  22 dsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlask.esceffhdpaakgsneGkvrkalkvePlpdGs 103
                       + g + + ++G +++e+a+a+++ +ydW++k+ fals+ e+++l++l++  +scef hdp+ ++s++G++ k+lkv+   d  
  PSME_00005435-RA 127 KMGGIAVAKEGCMFFEFAPAVGPHQYDWSRKKIFALSVVEIGTLLSLGPDdDSCEFTHDPFIGKSEAGQILKVLKVHMSEDTG 209
                       5677899*****************************************96379***********************9888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.102.2E-470105IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544474.32E-21123217IPR009044ssDNA-binding transcriptional regulator
Gene3DG3DSA:2.30.31.101.1E-29125215IPR009044ssDNA-binding transcriptional regulator
PfamPF085369.0E-28125215IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0032211Biological Processnegative regulation of telomere maintenance via telomerase
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045910Biological Processnegative regulation of DNA recombination
GO:0009508Cellular Componentplastid chromosome
GO:0009570Cellular Componentchloroplast stroma
GO:0003697Molecular Functionsingle-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0042162Molecular Functiontelomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MLRLKGLGTQ ILGGASTRRF QLLCMPASSS HWYSKVAKAS SNDVSSETRV SGLSSSPEPF  60
ALVQPGFLPR QTNKIYVKHT VYKREGAFSM RPKGPDYITL TCNSINANFQ SSNNNMLKSC  120
FIFLLLKMGG IAVAKEGCMF FEFAPAVGPH QYDWSRKKIF ALSVVEIGTL LSLGPDDDSC  180
EFTHDPFIGK SEAGQILKVL KVHMSEDTGV CLFKLREFCQ LFSLLLSIVD SFILYCFAIA  240
QKHAAFGVID YL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4koq_A5e-29742158122Single-stranded DNA-binding protein WHY3, chloroplastic
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NLD12e-89A9NLD1_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.17e-32ssDNA-binding transcriptional regulator