PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00005510-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 256aa    MW: 27804.6 Da    PI: 7.2372
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00005510-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.81.9e-08157186732
                       HHHHHHHHHHHHHHHHHHCTSCCC...... CS
               HLH   7 erErrRRdriNsafeeLrellPkas....k 32 
                       ++ErrRR+++N++++ Lr+++Pk s    +
  PSME_00005510-RA 157 MAERRRRKKVNDRLFMLRSVVPKVSkvevN 186
                       79*********************5435553 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.46E-7145183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508888.594150216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-6156186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.53E-6157185No hitNo description
Gene3DG3DSA:4.10.280.102.7E-6157186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MEMAWIGLLD KSFSSFRAIL NGGGEYDFYS TMDANEMALE ALLGSSLMCP DGSVLSNVQT  60
ETIDAFHHMD CSITTIPEML EHPSQGSDEL GLLQRRAEIE SGFHKNEGSH KLNGMVGGSR  120
GNASHAANNN NNDGYASAAS VGRGRGRKTG LPAKNLMAER RRRKKVNDRL FMLRSVVPKV  180
SKVEVNTREG KALNIHMFCS KKAGMLLSTI SALDGVGLDV KQAVISCFNG FALEFLQAEQ  240
PNGNVTAEEI KTLLLH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1226876e-50BT122687.1 Picea sitchensis clone WS0454_C09 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021673396.11e-48transcription factor ICE1-like isoform X2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.15e-25bHLH family protein