PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00005649-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

HB-other

Protein Properties

Length: 251aa MW: 28717.2 Da PI: 10.5998

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00005649-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	31.3	3.5e-10	91	135	9	53
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++ +e+ ++F++n ps + + L+k+l+Lt rqV +WF+N R+ PSME_00005649-RA 91 ANAVERFRQVFAENELPSMSCKLVLSKQLDLTYRQVHMWFKNARY 135 567888999**********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.99E-11	76	139	IPR009057	Homeodomain-like
PROSITE profile	PS50071	12.681	80	140	IPR001356	Homeobox domain
SMART	SM00389	3.3E-8	82	144	IPR001356	Homeobox domain
CDD	cd00086	1.43E-6	83	141	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.2E-11	83	150	IPR009057	Homeodomain-like
Pfam	PF00046	1.0E-7	91	135	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MVYSSSNSEQ KMEMPRNEKS NETNLMGEGV VGPKKKIPKE KKAESASLIS SVRVENKSRN 60 TKRKHRRKNI KTPLSISSRN ESKRTMSRLP ANAVERFRQV FAENELPSMS CKLVLSKQLD 120 LTYRQVHMWF KNARYMSLKK KKMNRLKESA APVISANTRR LKVESSKSTP QIKEPDDAGN 180 SYLTEMEKLG NIEFKLESLR KILETFCPKE GADLSNDKNP EGIANLLSEE LLMYVPVVEL 240 REKSLQVAPV R

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.1	7e-16	pathogenesis related homeodomain protein A