PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00005816-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 146aa MW: 16282.5 Da PI: 7.304

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00005816-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	275.6	6e-85	5	146	1	142
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 ppp++flgpkcalwdc+rpaqg++w+qd+cs fh tla neg+pg++pvl p+gidlkdg+lfaalsak+q k vgipecegaatakspwna PSME_00005816-RA 5 PPPATFLGPKCALWDCSRPAQGTKWCQDFCSDFHMTLASNEGAPGMRPVLHPGGIDLKDGPLFAALSAKTQEKAVGIPECEGAATAKSPWNAY 97 89***************************************************************************************** PP VOZ 94 elfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrk 142 elfd+ +lege+irewlff kprr fesgnrkqrslpdysgrgwhesrk PSME_00005816-RA 98 ELFDMYVLEGESIREWLFFYKPRRDFESGNRKQRSLPDYSGRGWHESRK 146 **********************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
PGLCPPPATF LGPKCALWDC SRPAQGTKWC QDFCSDFHMT LASNEGAPGM RPVLHPGGID 60 LKDGPLFAAL SAKTQEKAVG IPECEGAATA KSPWNAYELF DMYVLEGESI REWLFFYKPR 120 RDFESGNRKQ RSLPDYSGRG WHESRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010924400.1	5e-84	transcription factor VOZ1 isoform X4
Refseq	XP_010924401.1	5e-84	transcription factor VOZ1 isoform X3
Swissprot	Q9SGQ0	3e-77	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A5CA22	1e-81	A5CA22_VITVI; Uncharacterized protein
TrEMBL	F6H4X2	2e-81	F6H4X2_VITVI; Uncharacterized protein
STRING	VIT_12s0028g02670.t01	3e-82	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-79	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]