PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00005878-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C3H
Protein Properties Length: 454aa    MW: 49088.3 Da    PI: 6.5801
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00005878-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.62.8e-10165190127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +kt+lC+ f++ GtC+y ++C+FaHg+
  PSME_00005878-RA 165 FKTKLCCKFRA-GTCPYSSNCNFAHGM 190
                       69*********.*************95 PP
2zf-CCCH20.58.3e-07240264226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       kt+ C+ f+    C+yGdrC+F H+
  PSME_00005878-RA 240 KTRHCKKFYTDEGCPYGDRCNFVHD 264
                       8999********************7 PP
3zf-CCCH42.97.9e-14306331126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       +kt++C+ +  tG+C++Gd+C+FaHg
  PSME_00005878-RA 306 WKTRICNKWETTGHCPFGDKCHFAHG 331
                       8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.57E-8162195IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-14163197IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-5164190IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.155164191IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-8165190IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-9237265IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-7238265IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.272238266IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-4240264IPR000571Zinc finger, CCCH-type
SMARTSM003561.1240265IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-17301336IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-10302336IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-9305332IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.145305333IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-11306331IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
YFSGSGTFQG LGVYSWGLKQ RETMEYEVDT SGAAELGMGM GGGAVEDVYW VAGGNEQDMW  60
ATEEDYDQAS SQGYRQSDGG WSGGGDYRAG ALEGRQSRSG SEPPHKKSKN GHGDLQGNGS  120
RSRSGYQGEL GQGTSSGTPP PSNGTVNEVS SSGGGKSKGT GRMFFKTKLC CKFRAGTCPY  180
SSNCNFAHGM EELRKPPPNW QEIVAAQEED RAQRAERRGE NQIPCVSSSG VGSDSQRFHK  240
TRHCKKFYTD EGCPYGDRCN FVHDDQSRSR EYVAISLAPT PSPGNGNGAG NGSNGGNGSF  300
QRPSNWKTRI CNKWETTGHC PFGDKCHFAH GLAELQKYGG GFLDGENGDT PGGLRNDSKQ  360
SGTLPKAHVD AGAGPSSSVY ITDNYAVNSN QRSMGNFMSQ RQGQRILPKW KGPDKISRIY  420
GDWIEDNDWD FTSRSTASQI EKVGHAEEEI LNEV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1143910.0BT114391.1 Picea glauca clone GQ03513_L14 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010240878.11e-123PREDICTED: zinc finger CCCH domain-containing protein 56
SwissprotQ84UQ39e-99C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A0D6R3G61e-135A0A0D6R3G6_ARACU; Uncharacterized protein
STRINGXP_010240878.11e-123(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-75C3H family protein