PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00005901-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family B3
Protein Properties Length: 188aa    MW: 22296.8 Da    PI: 9.6289
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00005901-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3391.4e-12741601199
                       HHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3  11 lksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       +++g +++   f++++ +g+  +++  t++d +g sW+++   yr++++r v+t+GW eF+++ + k gD+++ +  +++ f  +v++f +
  PSME_00005901-RA  74 GRNGKMYFQVIFMTKYlSGS--QGIVATFKDCDGFSWRIEWyAYRQSGQRLVFTTGWYEFASDRNAKYGDILLVEILNSKHF--KVQIFPR 160
                       67889999999*****7555..7899**************9456999999*************************7776777..9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.7E-1459161IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-1460162IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.13764161IPR003340B3 DNA binding domain
SMARTSM010198.6E-564161IPR003340B3 DNA binding domain
PfamPF023621.3E-1174160IPR003340B3 DNA binding domain
CDDcd100173.80E-1185159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MEIRAQVIWT RESWLFVDNE TSMMGTKVNF KNRYKPHVGE GLLSPNREMV TYFVKYIFTE  60
HSSFARKIQR KCLGRNGKMY FQVIFMTKYL SGSQGIVATF KDCDGFSWRI EWYAYRQSGQ  120
RLVFTTGWYE FASDRNAKYG DILLVEILNS KHFKVQIFPR EICMAIKENN ALGCTREVGF  180
LEFFHYML
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-06B3 family protein