PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00005902-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 240aa    MW: 26697.6 Da    PI: 9.9949
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00005902-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.3e-1087135555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h+ +Er+RRd+++   ++L +ll + +  +++K + ++ L +A+++I++Lq
  PSME_00005902-RA  87 HKLVERQRRDKMKALCSTLISLLAEEF--RKTKHTISDKLLEAINHIRHLQ 135
                       99***********************65..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.12282134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-986149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.51E-986149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.05E-1087138No hitNo description
PfamPF000106.5E-787135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.001488140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
PGLVVQLDLT SADDSSPAVT QCLQEFVGNF GDPAQTLTCK SSTNSLLNSR NPLSPPTRRN  60
RRKKAVAGGR GHDLEPSADC IGNSDVHKLV ERQRRDKMKA LCSTLISLLA EEFRKTKHTI  120
SDKLLEAINH IRHLQAKLIE FEKKRDEQKA TVKPFFGSSS VFKTLKTAQV RPSNVLDKFQ  180
TIRVSKFGPG VQVTVNTFKN QIEFSSLLMV LEEAEVDVVS ATVFAINDRV FYSIHSKVIC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14961RNPLSPPTRRNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NXF29e-64A9NXF2_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.11e-14bHLH family protein