PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00005938-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 223aa    MW: 25281.8 Da    PI: 8.2095
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00005938-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.34.7e-0791133855
                       HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        Er+RR ++++ + +Lr+++Pk +      K +  +i+  A+ Y+ +Lq
  PSME_00005938-RA  91 TERKRRMKLKETLLNLRSVVPKiS------KIDNQSIVGDAISYVLELQ 133
                       6*********************66......9999*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.87E-782137No hitNo description
PROSITE profilePS5088811.71983132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-1384152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-589138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-1091147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MIGLFENLSG QSSSYSEPKT LTELNPSISV CSELIAMDHQ NWMDMDENSR QFEWDDTNSE  60
IIGSNLAATQ AFNSNGGVVL QQRRTFKNLY TERKRRMKLK ETLLNLRSVV PKISKIDNQS  120
IVGDAISYVL ELQKKVQEIQ DEIKVLSTSN RPDHHTQLMA ETIKPLTNAD YASSMKNLPD  180
KLVKHGKILE VSTNISLQLS VINGIFLVVI RYSHKVYACA RYS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LRN64e-37B8LRN6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.12e-16bHLH family protein