PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00006142-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 314aa    MW: 34287.5 Da    PI: 7.6229
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00006142-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.51e-072602981255
                       HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        R+ri +++  L+el+P++      K +Ka++L + ++Y+k Lq
  PSME_00006142-RA 260 GRERIAERMKDLQELVPNS-----NKTDKASMLDEIIDYVKFLQ 298
                       599***************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-12246306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.339248297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.43E-9252302No hitNo description
PfamPF000103.9E-5253298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-7254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-11261302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MQPSTSLLGT GPVQSMSSVT SCLSSSPENM EDFLEQMFLM PSWSDVAMKT TSWEFNPANA  60
SQGNNASNNK NSPQNLQSNT QRLFTMSLLP SGIGGQGLNS QENKGHVGEH MQYSNYEESQ  120
FLASRRQTRF RKGSMKPIRL QLLASMGNSP HGTVVMTRSP STGGSCNGSD GGMLPLPLSL  180
GQAGKSGEMN ETRSQDEIEA SFKSANNSGQ VPMQGYGGMP QPQHQNPPLT EVGAAPPVRP  240
RVRARRGQAT DPHSIAELLG RERIAERMKD LQELVPNSNK TDKASMLDEI IDYVKFLQLQ  300
VKVSYETLYP SLFL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1150431e-127BT115043.1 Picea glauca clone GQ03607_N12 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.11e-28LJRHL1-like 2