PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00006160-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 1235aa    MW: 136683 Da    PI: 6.7792
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00006160-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox15.62.7e-053364232
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHH CS
          Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeeree 32
                      ++R+ ++++q+++Le+ F++   +p +ee++ 
  PSME_00006160-RA 33 KTRWHPNPDQTQILEAIFNSgMVNPLREEIKI 64
                      89*****************9999**9999975 PP
2Homeobox50.92.6e-16221281257
                       T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                       ++R+ ++++q+++Le+ F++   +p +ee++ +  +l    ++++ +V++WFqNr+a+ k+
  PSME_00006160-RA 221 KTRWHPKPDQIQILEAIFNSgMVNPPREEIKGIRGQLeefgHVEDVNVFYWFQNRKARVKR 281
                       89*****************99*************************************997 PP
3Homeobox54.32.3e-17598658257
                       T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                       ++R+ ++++q+++Le+ F++   +p +ee++++ ++l    ++++ +V++WFqNr+a+ k+
  PSME_00006160-RA 598 KTRWHPKPDQIQILEAIFNSgMVNPPREEIKRIRDQLeefgHVEDVNVFYWFQNRKARVKR 658
                       89*****************99*************************************997 PP
4Homeobox536e-17891951257
                       T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                       ++R+ ++++q+++Le+ F++   +p +ee++++  +l    ++++ +V++WFqNr+a+ k+
  PSME_00006160-RA 891 KTRWHPKPDQIQILEAIFNSgMVNPPREEIKRIRGQLeefgHVEDVNVFYWFQNRKARVKR 951
                       89*****************99*************************************997 PP
5Wus_type_Homeobox101.56.2e-33220282264
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        a+tRW P+p+Qi+iLe++++sG+++P++eei+ i+ +Lee+G++ed NVfyWFQNrkaR ++k
   PSME_00006160-RA 220 AKTRWHPKPDQIQILEAIFNSGMVNPPREEIKGIRGQLEEFGHVEDVNVFYWFQNRKARVKRK 282
                        689**********************************************************99 PP
6Wus_type_Homeobox104.57.1e-34597659264
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        a+tRW P+p+Qi+iLe++++sG+++P++eei+ri+ +Lee+G++ed NVfyWFQNrkaR ++k
   PSME_00006160-RA 597 AKTRWHPKPDQIQILEAIFNSGMVNPPREEIKRIRDQLEEFGHVEDVNVFYWFQNRKARVKRK 659
                        689**********************************************************99 PP
7Wus_type_Homeobox103.71.2e-33890952264
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        a+tRW P+p+Qi+iLe++++sG+++P++eei+ri+ +Lee+G++ed NVfyWFQNrkaR ++k
   PSME_00006160-RA 890 AKTRWHPKPDQIQILEAIFNSGMVNPPREEIKRIRGQLEEFGHVEDVNVFYWFQNRKARVKRK 952
                        689**********************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.863217282IPR001356Homeobox domain
SMARTSM003891.3E-4219286IPR001356Homeobox domain
SuperFamilySSF466895.56E-11220285IPR009057Homeodomain-like
CDDcd000867.27E-6221283No hitNo description
PfamPF000464.0E-14221281IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.8E-7221287IPR009057Homeodomain-like
PROSITE profilePS5007110.511594659IPR001356Homeobox domain
SMARTSM003896.1E-7596663IPR001356Homeobox domain
SuperFamilySSF466892.1E-11597662IPR009057Homeodomain-like
PfamPF000464.4E-15598658IPR001356Homeobox domain
CDDcd000862.78E-7598660No hitNo description
Gene3DG3DSA:1.10.10.603.1E-7598664IPR009057Homeodomain-like
PROSITE profilePS5007110.236887952IPR001356Homeobox domain
SMARTSM003891.9E-6889956IPR001356Homeobox domain
SuperFamilySSF466893.89E-11890955IPR009057Homeodomain-like
PfamPF000469.7E-15891951IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.3E-7891957IPR009057Homeodomain-like
CDDcd000868.66E-7891953No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1235 aa     Download sequence    Send to blast
MSRFNKNIFH TEGALSHNYV PEKERERTVP VAKTRWHPNP DQTQILEAIF NSGMVNPLRE  60
EIKIIRGGMR EDSISIDNSV ITVIVNDIPM QDPKEPINLG AFFGDDALLL DSSGHMVQVN  120
EWGFTMEGLE HGATYFLCTI VYVDCCGSID QAIEVPLKFE HITSKVLTMA RMLNGVFMQF  180
LEGINGSPFV LYKGHKGCQE GALSHNYVPE KERERTVPVA KTRWHPKPDQ IQILEAIFNS  240
GMVNPPREEI KGIRGQLEEF GHVEDVNVFY WFQNRKARVK RKRQLQNAEE SESRAAKCAR  300
PLSSSSLTST TSTSTSVQSQ PVTIVNQAPS SSAGPVISSF ARHHCNQQVN QKMSTTQYSN  360
IQPIGAGGAT ESRGILNEGG VREDSINIDN SVITVIVNDI PMQVPKEPIN LGAFFGDDAL  420
LLDSSGHLVQ VNEWGFTMEG LAHGATYFLD SINIDNSVIT VIVNDIRMQA PKEPINLGDF  480
FGDDALLLDS SGHMVQVNEW GFTMEGLEHG ATYFLCTTVY VDHCGSIDQN IEATLKFEHI  540
TSKVLTMARM LNGVFMQLLE GSNGAPFVLY KGHKGCQEGA LPHNYVQKER ERTVPVAKTR  600
WHPKPDQIQI LEAIFNSGMV NPPREEIKRI RDQLEEFGHV EDVNVFYWFQ NRKARVKRKR  660
QLQNAEESES RAAKCARPLS SSSSLTSTTS TSTSVQSQPV TIVNQAPSSS AGPVISSFAK  720
HHCNQQVNQK MSTTQYSNIQ PIGAGGATES RGILNEGGVR EDSINIDNSV ITVIVNDIPM  780
QVPKEPINLG AFFGDGALLL DSSGHLVQVN EWGFTMEGLG HGATYFLPTC HHSHSMNSKK  840
HWPSMFMKPK SSTSPETSNS SAMRSLYPRE GALSHNYVPE KERERTVPVA KTRWHPKPDQ  900
IQILEAIFNS GMVNPPREEI KRIRGQLEEF GHVEDVNVFY WFQNRKARVK RKRQLQNAEE  960
SESRAAKCAR PLSSSSLTST TSTSTSTSVQ SQPVTIVNQA PSSSAGPVIS SFARHHCNQQ  1020
VNQKMSTTQY SNIQPIGAGG ATESRGILNE GGVREDSINI DNSVITVIVN DIPMQVPKEP  1080
INLGAFFGDD ALLLDSSGHL VQVNEWGFTM EGLVHGATYF LNRKAKFKQK RQLQNAEESE  1140
SRATKCARPL SSSSSSLISK TSTSTSVQSQ PVTIVNEAPL LLLGGMREDL ISIDNSVINV  1200
IVNDIPMQAP KQPINLGLSL GMMHFYSILL ATWCK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLR9R8D11e-104R9R8D1_PICAB; WUSCHEL homeobox protein WOX8B
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.14e-30homeobox-3