PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00006161-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 272aa    MW: 30345.1 Da    PI: 6.7994
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00006161-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox48.12e-152383257
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      ++R+ ++++q+++Le+  ++   +p +ee++++  +l    ++++ +V++WFqNr+a+ k+
  PSME_00006161-RA 23 KTRWHPKPDQIQILEAIVNSgMVNPPREEIKRIRGQLeefgHVEDVNVFYWFQNRKARVKR 83
                      89*****************99*************************************997 PP
2Wus_type_Homeobox102.52.9e-332284264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       a+tRW P+p+Qi+iLe++ +sG+++P++eei+ri+ +Lee+G++ed NVfyWFQNrkaR ++k
   PSME_00006161-RA 22 AKTRWHPKPDQIQILEAIVNSGMVNPPREEIKRIRGQLEEFGHVEDVNVFYWFQNRKARVKRK 84
                       689**********************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.1511984IPR001356Homeobox domain
SMARTSM003892.4E-42188IPR001356Homeobox domain
SuperFamilySSF466896.13E-102287IPR009057Homeodomain-like
PfamPF000463.1E-132383IPR001356Homeobox domain
CDDcd000862.76E-52385No hitNo description
Gene3DG3DSA:1.10.10.606.6E-62389IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MKGALSHNYV PEKERERTVA VAKTRWHPKP DQIQILEAIV NSGMVNPPRE EIKRIRGQLE  60
EFGHVEDVNV FYWFQNRKAR VKRKRQLQNA EESESRAAKC ARPLSSSSSS STTSTSTSVQ  120
SQPVTIVNQA PSSSAGPIIS SFAAHHCNQQ VNQKMSTTQY SNIQPIGAGG APESRGILNE  180
GGVREDSFNI DNSVIIVIVN DIPMQVPKEP INLGTFFGDD ALLLDSSGHM VQVNEWGFTM  240
EGLEHGATYF LVLYLHIPIP RVYIYIDQHE FN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLR9R8B67e-95R9R8B6_PICAB; WUSCHEL homeobox protein WOX8C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.12e-28homeobox-3