PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00006162-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 233aa    MW: 25632.9 Da    PI: 9.1617
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00006162-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox48.51.5e-152383257
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      ++R+ ++++q+++Le+  ++   +p +ee++++  +l    ++++ +V++WFqNr+a+ k+
  PSME_00006162-RA 23 KTRWHPKPDQIQILEAIVNSgMVNPPREEIKRIRGQLeefgHVEDVNVFYWFQNRKARVKR 83
                      89*****************99*************************************997 PP
2Wus_type_Homeobox102.92.2e-332284264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       a+tRW P+p+Qi+iLe++ +sG+++P++eei+ri+ +Lee+G++ed NVfyWFQNrkaR ++k
   PSME_00006162-RA 22 AKTRWHPKPDQIQILEAIVNSGMVNPPREEIKRIRGQLEEFGHVEDVNVFYWFQNRKARVKRK 84
                       689**********************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.1181984IPR001356Homeobox domain
SMARTSM003892.4E-42188IPR001356Homeobox domain
SuperFamilySSF466893.02E-102287IPR009057Homeodomain-like
PfamPF000462.4E-132383IPR001356Homeobox domain
CDDcd000864.38E-52385No hitNo description
Gene3DG3DSA:1.10.10.602.8E-62388IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MKGALSHNYV PEKERERTVP VAKTRWHPKP DQIQILEAIV NSGMVNPPRE EIKRIRGQLE  60
EFGHVEDVNV FYWFQNRKAR VKRKRQLQNA EGSESRAAKC ARPLSSSSLT STTSTSTSVQ  120
SQPVTIVNQA PSSSAGKVIS SFAAHHCNQQ VNQKMSTTQY SNIQPIGAGG ATESRGILNE  180
GGVREDSINI DNSVITVIVN DIPMQVPKEP INLGTFFGDE ALLLDSSGHM VQI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLR9R8672e-81R9R867_PICAB; WUSCHEL homeobox protein WOX8D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.14e-30homeobox-3