PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00006316-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 359aa MW: 40930.7 Da PI: 9.8277

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00006316-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	286.2	3.3e-88	119	308	19	217
VOZ 19 paqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaaelfdlsllegetirewlf 111 aqgsew+qdycs+fh +alneg++g+ p+l p+gi+lkdgllfa+l ak+ gk gi eceg +++kspwna++lfdl +l+ge ire PSME_00006316-RA 119 HAQGSEWCQDYCSNFHGIVALNEGPLGMGPILLPRGINLKDGLLFATLGAKIVGKAFGILECEGVTKTKSPWNAPKLFDLFVLQGEVIRE--- 208 58************************************************************************************99... PP VOZ 112 fdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdekksakgkvskds 204 esgnrk+rsl dy+g gwhesrkqvmke+gglkrsyymdpqps++fewh+yeye+n++da++lyrlelk+vd+kk++k kv+ ds PSME_00006316-RA 209 ------DSESGNRKNRSLLDYNGHGWHESRKQVMKELGGLKRSYYMDPQPSNQFEWHIYEYEMNKCDACSLYRLELKQVDSKKNTKEKVMGDS 295 ......469******************************************************************************** PP VOZ 205 ladlqkklgrlta 217 dlq+k+grl+a PSME_00006316-RA 296 GFDLQHKIGRLSA 308 *********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MMGKSSKSMS KSTTHQLFKT KAKNTVDNLQ KQSYIRQICL EICGVCCNLM KRKMMLPVFL 60 QYHTALSFNL MKIPLKLLIH LVFRRTSMWT MLMHKHKPLM GLVGMKTFIQ NHYCKLLMHA 120 QGSEWCQDYC SNFHGIVALN EGPLGMGPIL LPRGINLKDG LLFATLGAKI VGKAFGILEC 180 EGVTKTKSPW NAPKLFDLFV LQGEVIREDS ESGNRKNRSL LDYNGHGWHE SRKQVMKELG 240 GLKRSYYMDP QPSNQFEWHI YEYEMNKCDA CSLYRLELKQ VDSKKNTKEK VMGDSGFDLQ 300 HKIGRLSAEL AVDTKGSTKG RTNLKHKNFS KYTYSAASPA SPDIQYGYYV VEANGYYGT

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MMGKSSKSMS KSTTHQLFKT KAKNTVDNLQ KQSYIRQICL EICGVCCNLM KRKMMLPVFL  60
QYHTALSFNL MKIPLKLLIH LVFRRTSMWT MLMHKHKPLM GLVGMKTFIQ NHYCKLLMHA  120
QGSEWCQDYC SNFHGIVALN EGPLGMGPIL LPRGINLKDG LLFATLGAKI VGKAFGILEC  180
EGVTKTKSPW NAPKLFDLFV LQGEVIREDS ESGNRKNRSL LDYNGHGWHE SRKQVMKELG  240
GLKRSYYMDP QPSNQFEWHI YEYEMNKCDA CSLYRLELKQ VDSKKNTKEK VMGDSGFDLQ  300
HKIGRLSAEL AVDTKGSTKG RTNLKHKNFS KYTYSAASPA SPDIQYGYYV VEANGYYGT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011626288.1	1e-100	transcription factor VOZ1
Refseq	XP_011626289.1	1e-100	transcription factor VOZ1
Swissprot	Q9SGQ0	6e-87	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	W1Q0P1	4e-99	W1Q0P1_AMBTC; Uncharacterized protein
STRING	ERN14021	1e-100	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	4e-89	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]