PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00006534-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C3H
Protein Properties Length: 442aa    MW: 48273.4 Da    PI: 8.5267
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00006534-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.13.4e-09110130526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        C+++++ G CkyG+ C+F H+
  PSME_00006534-RA 110 ACNYWLA-GNCKYGEECNFLHS 130
                       6******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.222046IPR000571Zinc finger, CCCH-type
SMARTSM003560.092145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3105132IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5107131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-6107130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-6109130IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-6110130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.104.8E-22132375IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509784.58E-23136303IPR017986WD40-repeat-containing domain
SMARTSM003205.7E-6136175IPR001680WD40 repeat
PfamPF004002.4E-4140175IPR001680WD40 repeat
PROSITE profilePS5029411.735143184IPR017986WD40-repeat-containing domain
PROSITE profilePS5008212.514143184IPR001680WD40 repeat
PROSITE patternPS006780162176IPR019775WD40 repeat, conserved site
SMARTSM0032082214251IPR001680WD40 repeat
SMARTSM003202.5258295IPR001680WD40 repeat
SMARTSM0032047330372IPR001680WD40 repeat
SuperFamilySSF509784.58E-23336375IPR017986WD40-repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MDVETSGKST GNKRTYTRLP RSSQVCVFWQ DGRCNRESCN FLHVGEPGSV KRVGASNGFA  60
PKRSYNGSDE REMQAAGPPG GSRRNTSARW GRGRGGRIIS DERQKIADKA CNYWLAGNCK  120
YGEECNFLHS FVMGSDVKFV TQLRGHVKAI RGIAYPSDSG KLYSGGQDKK VIVWDCQTGE  180
GRDIPLDDEV GCVMSEGPWI FVGVPNAVKA WNILTSTELS LVGPRGQVHA LVVGNGMLWA  240
GTHDGSILAW KFSPIANTFE PAASLAGHTL PVVSLVSGAD RLYSGSMDKT IRTTGTSSRR  300
HLSDEDVEEG LPQDATSKKR KPSWLKEIVK EAEESVGPPR REGVLALCGM NDEQAKPVLL  360
CSCNDNTVRL YDLPSVWSDG RKDDRAEYGV TIEQRAHGED GVGKGSGANV FGLGKKGLRF  420
TLYIPSCWKY VWMKGISRVE ES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1164461e-174BT116446.1 Picea glauca clone GQ03718_N05 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006857936.11e-121zinc finger CCCH domain-containing protein 17
RefseqXP_011628379.11e-121zinc finger CCCH domain-containing protein 17
TrEMBLA0A0C9SAF71e-166A0A0C9SAF7_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_3705_2455 transcribed RNA sequence
STRINGERN194031e-120(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.21e-95C3H family protein