PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00006575-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 316aa    MW: 34695.5 Da    PI: 6.7834
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00006575-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.5e-10153195754
                       HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++ErrRR+++N++++ L  ++Pk       K +  +iL  AveY+k+L
  PSME_00006575-RA 153 MAERRRRKKVNDRLFMLHFVVPKV-----SKTDRTSILGDAVEYLKEL 195
                       79*********************6.....49***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.19E-13145208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.262146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-8152195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-9152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-11153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.60E-9153199No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEMAWTGLLD ESFSSFRAIL NGGGEYDFYS TMDANEMALE ALLGSSLMCP DGSMLSNVQT  60
ETIDTFHHMD CSITTIAEML EHPNQGSDEL GEAEIESGFH KNEGSHKLNG MVGGSRGNAS  120
HDANNNNNNG YASAASVGRG RGRKTGLPAK NLMAERRRRK KVNDRLFMLH FVVPKVSKTD  180
RTSILGDAVE YLKELLQRIN GLHIELMYGS SKSKPLASTL LDFPCIMNRE YHASLLNPEV  240
EPVRGRPLTF TCSVRKKAGM LLSTISALDG VGLDVKQAVI SCFNGFALEV LQAEGFTCKE  300
MKCGRRMVAR QDASRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017419478.12e-50PREDICTED: transcription factor ICE1-like isoform X2
STRINGXP_007161631.13e-48(Phaseolus vulgaris)
STRINGcassava4.1_005158m3e-48(Manihot esculenta)
STRINGGSMUA_Achr6P08070_0013e-48(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.47e-45bHLH family protein