PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00006633-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NF-X1
Protein Properties Length: 1434aa    MW: 158184 Da    PI: 8.0946
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00006633-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.87.5e-06865883119
          zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                       CGkH Cq+lCH G CppC 
  PSME_00006633-RA 865 CGKHFCQELCHSGHCPPCL 883
                       ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578508.03E-5470542No hitNo description
PROSITE profilePS500168.511478539IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.17481537IPR001841Zinc finger, RING-type
PROSITE patternPS013590481536IPR019786Zinc finger, PHD-type, conserved site
CDDcd060081.17E-9570625No hitNo description
SMARTSM004380.025587605IPR000967Zinc finger, NF-X1-type
PfamPF014223.5589604IPR000967Zinc finger, NF-X1-type
CDDcd060085.45E-10632680No hitNo description
SMARTSM004380.0042642661IPR000967Zinc finger, NF-X1-type
PfamPF014224.7E-4642660IPR000967Zinc finger, NF-X1-type
CDDcd060081.05E-9696739No hitNo description
SMARTSM004380.0049706725IPR000967Zinc finger, NF-X1-type
PfamPF014220.071706723IPR000967Zinc finger, NF-X1-type
CDDcd060083.43E-14754800No hitNo description
SMARTSM004380.039764783IPR000967Zinc finger, NF-X1-type
PfamPF014224.2E-4764781IPR000967Zinc finger, NF-X1-type
PfamPF0142224825836IPR000967Zinc finger, NF-X1-type
CDDcd060083.74E-11855907No hitNo description
SMARTSM004384.8E-5865884IPR000967Zinc finger, NF-X1-type
PfamPF014226.0E-5865882IPR000967Zinc finger, NF-X1-type
CDDcd060082.48E-5912960No hitNo description
SMARTSM004380.57922940IPR000967Zinc finger, NF-X1-type
PfamPF0142227930939IPR000967Zinc finger, NF-X1-type
SMARTSM004380.19751007IPR000967Zinc finger, NF-X1-type
PfamPF014220.024975990IPR000967Zinc finger, NF-X1-type
PfamPF0142215010091035IPR000967Zinc finger, NF-X1-type
SMARTSM004380.1310161037IPR000967Zinc finger, NF-X1-type
SMARTSM003930.006811311210IPR001374R3H domain
PfamPF014242.5E-611431207IPR001374R3H domain
PROSITE profilePS510619.94111461211IPR001374R3H domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1434 aa     Download sequence    Send to blast
MSTSAENGDI QYSNSRGNQG SEMRDPTRIT MGGNGRREWV PRGRGRGNPD PSSTPNSISN  60
SNPNSNHKPN FVPKRNSHQN TRNSKRNSNT NPDPNFNTNP DPSQVSWMER NGEQSYYRQR  120
QLGSGSGVDS RMQSLQLSDN QSNVGVNSAR SRGNDLESAG DNNRNLNMDS TPSQAFRVER  180
SGSHPYQYRP VSSSSSVSRP TQTSKLPDSQ FSVSENPGGS ERSTSHQTDD NSEGNGLSLP  240
QKQQRGPFRG RGSGGNKSYY RRMGIFDPQQ NTANQSIRGQ ENDDRIGYCV SDRQNEAAIL  300
GNNLKNEDLI GPSIGNQITQ STGPQRREME GFRNRKMMNS SQDWRCNLPR APRSYTANHG  360
ILREDNAERT DDYDNGRRNE TSRQNYANSD LMTLSIDGNQ LTQSTDQQRR QMKGFRNKKM  420
NSSQDWRCKQ ESRANSSHSL QSNESISTKQ ESRAKTTLDG SSVPKLVHEI EEKLNKGKVE  480
CMICYDIVVR SAAIWSCGSC YAIFHLHCVR KWARTPSSVD LSAGQSQGSN WRCPGCQSVQ  540
LLSPDDLRYY CFCEKVQEPE VEFYLTPHSC GGPCGKPLEK VKKTPSCPHT CTLQCHPGPC  600
PSCSAMAPPQ PCPCGKTTIT RRCSDHKSIE SCGQCCEKPL RCGRHYCDNV CHEDLCDPCK  660
VLIKASCFCA EKEEMILCGD MEIQGELDWK NGVFACENLC MKMLSCQNHK CSKRCHPGEC  720
GECELSPGKV NSCPCGKTQL QGQRKSCMDS VPTCSEVCEK LLPCGNHLCI NTCHQGKCAP  780
CLVSVNQKCR CGSSSQTVPC WKTMVSVEEN TEFTCEKSCG QKKNCGRHRC SERCCPLANR  840
GGSNTHSSDW DPHLCQMSCG KKLQCGKHFC QELCHSGHCP PCLETIFTDL SCACGKTSIP  900
PPVPCGTPIP TCLYPCSIPQ PCGHLATHDC HFGECPPCTV PVAKNCVGSH VVLKNVPCGS  960
RDIRCNKLCG KTRQCGMHAC NRTCHLPPCD SVSMENSASV ARISCGQLCG APRRDCRHTC  1020
TASCHPSTPC PDTRCELLVT ITCSCGRLTA KVPCDAGGSN TRADPVLEAS ILHKLPVPLQ  1080
PVQSNSNRVP LGQRKLACDD ECTKLEKKKI LADAFGISTT VDLPGVNEQI SELLAELIRR  1140
EPQWVSAVEE RFRHLVLGRT KASSNSIRVH VFGPMPKDKR DMLRHLAERW SLSIYSAGWE  1200
PKRFLIIQAT QKSRAPMRSV MPKGSLPTMG LVQPPPFNSV VDMDPRLVLA LFDLPREAEV  1260
SSLILRFGGE CELVWLNDKN ALAIFTDPAR AATALRRVDH ASVYRGAIVV PHNGGLPSRN  1320
AWATKDGTAE NTNAWKKNAQ KTVWMEDSWG EDWSGAEVSR SVWQLKTNSI TATRNPYGAL  1380
ERDIAGETCT SASDAESSSK PLTSTGSTLV SSSQENQNKQ YSPSEVDDWE KVFD
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1053030.0BT105303.1 Picea glauca clone GQ02820_L14 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006828449.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLW1NKX50.0W1NKX5_AMBTC; Uncharacterized protein
STRINGERM958650.0(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1