PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00006691-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family G2-like
Protein Properties Length: 582aa    MW: 64805.4 Da    PI: 6.3031
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00006691-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like74.91.1e-23376428356
           G2-like   3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                        ++Wt  +H++Fv+aveqL G ++ +P++ilelmkv+gLt++ v+SHLQkYR++
  PSME_00006691-RA 376 NVEWTMAMHRCFVQAVEQL-GVDQGIPSRILELMKVDGLTRHYVASHLQKYRSH 428
                       579****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.72E-569161IPR011006CheY-like superfamily
SuperFamilySSF466893.05E-14373431IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.7E-23376431IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-21376428IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
RHILPREDEV ASRRYWQHFD PAWTRTKQDE AWSRKGNPAA GPILGYSPVQ LHPTPHGTPV  60
GQPLHDFPKG LRVLVLDENT EAAVETKSRL EGFEYVVSTF SSKTEALVVF ANETNSFHVA  120
LVEVSTVMSS RSCLSTAMKC IAKPISEDKL KNIWQHVVHK AFNECGTVLL ESLKPIKATI  180
LSMLHLGPEL ANASTLHEVQ YCTPIPTDSI KQDTSIEPCN SEKFPAPSTP QLEQGGRSPS  240
EEDKTLILDD TTNFKAGKHM LAIIVNAEAT SAWSSQVDSP TFVKKDTQDM YRISLKTRNS  300
TQCGLKSVDI TSDQLGNEIT SRVTSLHSIF ETADVQVVNA PGIAEEEAGS AEGSKSDDEN  360
IEKEAILSSY ACNEENVEWT MAMHRCFVQA VEQLGVDQGI PSRILELMKV DGLTRHYVAS  420
HLQKYRSHRR HILPREDEVA SRRYWQHFIL HGLELSKMKL GVVKGILLLD QFLDIHQFSY  480
ILHHMGLLWA NLFISTPNPN STIQGVSVQH TPISDPLNNN GSPLWEKSFN GHPPKEVIDE  540
SFKEALNNPW TALPLGLKPP SMESVMAELQ RQGISKIPPP AS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1078841e-119BT107884.1 Picea glauca clone GQ03113_O04 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.52e-60ARR-B family protein