PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00006710-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 290aa    MW: 32514.9 Da    PI: 8.5004
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00006710-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.5e-11103154154
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       +r +h+++E++RR++++  f++Lr+llP+      +K   ++ +  Av+YI++L
  PSME_00006710-RA 103 KRWSHKIIEKKRRKDMKMLFSRLRSLLPEE--ILRGKRAESDQVLGAVNYICDL 154
                       6789*************************6..38999999***********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.07E-13100172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-10101174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.50E-10102159No hitNo description
PROSITE profilePS5088812.119102154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-8103154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0091108160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MSIPSGFHSI FLSCDDDINR FVDTGSVSGS NPFLSGQPLE DPRSCHTPDA QRSILLNSCR  60
TGNPVSHYDL SNHPSLMQTI SSSSLPTHGS SCHRLTVTAP TQKRWSHKII EKKRRKDMKM  120
LFSRLRSLLP EEILRGKRAE SDQVLGAVNY ICDLHQKIKD LSREKDRMNA NLHKKQFSFV  180
GLQFSSNKKF CGRLQLGSDG EFPTVRINSV RSGVKISINA FEDQIVYCDV LLALEEFGLE  240
VVNATSSSIN NTVFHTIHNK VSDIDHFSMD DLYVKLRHLI SNNQGDLGAP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111115KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LNH58e-52B8LNH5_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25400.19e-22bHLH family protein