PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00006711-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 264aa    MW: 30003 Da    PI: 9.1093
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00006711-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.54.9e-1387139155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       +r +h++ E++RR++++  f++Lr+llP+ +     +K   ++ +  Av+YI++Lq
  PSME_00006711-RA  87 KRWSHKMTEKQRRKDMKVLFSRLRSLLPEeN---LRGKRAESDQVLGAVNYICHLQ 139
                       6789*************************66...9999999**************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.58E-1084143No hitNo description
SuperFamilySSF474591.31E-1484153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-1185143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.30986138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-1087139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-492144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MSIPSGFHSI LFSDHINILV DTDSVPGSKP FLSRQTLEDP RSYHTPHAER SIFDNTNSGT  60
LVNHYDLSNI LHGRSCHSLT GTAPTQKRWS HKMTEKQRRK DMKVLFSRLR SLLPEENLRG  120
KRAESDQVLG AVNYICHLQQ KIKDLSREKH RMNVANKDRK QFSTVKLLSY EHRRLQGSDG  180
EFPTVKINSV LSGVNVSIDA FEDQIVYSDV LMALEECGLE VVNATSSSIN NTVFHTIHNK  240
VFFYARGNII ILSAFDQNLN IHIS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LNH53e-50B8LNH5_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25400.16e-21bHLH family protein