PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00006756-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 264aa    MW: 30040.1 Da    PI: 8.2863
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00006756-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.16.1e-18124178256
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       rk+ +++k+q   Lee F+++++++ +++ +LA++l+L+ rqV vWFqNrRa+ k
  PSME_00006756-RA 124 RKKLRLSKDQSALLEESFRQHSTLNPKQKLDLAQRLNLSLRQVEVWFQNRRARTK 178
                       677889***********************************************98 PP
2HD-ZIP_I/II118.92.7e-38124213191
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                       +kk+rlsk+q++lLEesF+++++L+p++K +la++L+l+ rqv+vWFqnrRARtk+kq+E+d+e+Lkr++d+l+een++L+ke  eLr +l
  PSME_00006756-RA 124 RKKLRLSKDQSALLEESFRQHSTLNPKQKLDLAQRLNLSLRQVEVWFQNRRARTKLKQTEVDCEFLKRCCDTLTEENRKLKKELYELR-AL 213
                       69*************************************************************************************9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.022120180IPR001356Homeobox domain
SuperFamilySSF466891.33E-17122188IPR009057Homeodomain-like
SMARTSM003896.3E-16122184IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.7E-17124183IPR009057Homeodomain-like
CDDcd000862.05E-15124181No hitNo description
PfamPF000462.1E-15124178IPR001356Homeobox domain
PROSITE patternPS000270155178IPR017970Homeobox, conserved site
SMARTSM003401.6E-22180223IPR003106Leucine zipper, homeobox-associated
PfamPF021835.5E-10180214IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MEFWQRKCNT KLGLGLGRGL STVEDEAEAE KHSINNAPVQ LDLLPLRPVP LNSIAPPASQ  60
RAIDVNQVPF YNHAVLSSPN STLSMSMFHH DHYTYNTNTS KQDTLEVEAD RASDEEEGIA  120
STCRKKLRLS KDQSALLEES FRQHSTLNPK QKLDLAQRLN LSLRQVEVWF QNRRARTKLK  180
QTEVDCEFLK RCCDTLTEEN RKLKKELYEL RALKVESPFY MQLPAATLSM CPSCERVVTT  240
GSDHNINTPK SQLSLIPSNP STRK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172180RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018848897.12e-80PREDICTED: homeobox-leucine zipper protein HOX11 isoform X2
SwissprotP466653e-66HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA9NKN48e-82A9NKN4_PICSI; Uncharacterized protein
STRINGXP_008392143.15e-81(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-68homeobox from Arabidopsis thaliana