PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00006893-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 68aa    MW: 7745.47 Da    PI: 7.6726
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00006893-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.3e-091950132
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                      rg+WT+ Ed++l +++k +G g+W++ +++ g
  PSME_00006893-RA 19 RGAWTANEDKILTEYIKTHGVGQWRSLPKKSG 50
                      89*************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-101348IPR009057Homeodomain-like
PROSITE profilePS500906.6551448IPR017877Myb-like domain
SuperFamilySSF466893.23E-81550IPR009057Homeodomain-like
PfamPF002492.2E-61948IPR001005SANT/Myb domain
CDDcd001679.28E-52151No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 68 aa     Download sequence    Send to blast
MGRSPSYRCA KDDDEGINRG AWTANEDKIL TEYIKTHGVG QWRSLPKKSG EPHVYNNTHH  60
TSVPSQYE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002275148.18e-16PREDICTED: myb-related protein Zm38
TrEMBLA0A4D6V2952e-15A0A4D6V295_9ROSI; MYB transcription factor 30
STRINGXP_009361685.19e-15(Pyrus x bretschneideri)
STRINGVIT_09s0002g01400.t019e-15(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.11e-13myb domain protein 111