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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PSME_00006894-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 226aa MW: 25769.7 Da PI: 5.5773 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 25.5 | 3.1e-08 | 3 | 27 | 23 | 48 |
-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
+W++Ia +++ gRt++++k++w ++l
PSME_00006894-RA 3 RWALIAGRLP-GRTDNEIKNYWITHL 27
5*********.***********9986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 16.019 | 1 | 31 | IPR017930 | Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 9.6E-12 | 3 | 27 | IPR009057 | Homeodomain-like |
| Pfam | PF00249 | 3.8E-6 | 3 | 27 | IPR001005 | SANT/Myb domain |
| CDD | cd00167 | 3.51E-6 | 3 | 27 | No hit | No description |
| SuperFamily | SSF46689 | 1.3E-7 | 3 | 37 | IPR009057 | Homeodomain-like |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 226 aa Download sequence Send to blast |
MCRWALIAGR LPGRTDNEIK NYWITHLSKK VQLGEFDPSS QRNFKRRNSP SYSDYKGEKF 60 VDKDDYKGRN AQAVETIAAR LCGRVTVDVQ NQDSYSSDVL DILVGTNQGE KMEFKAADNH 120 VAQTDISKSW CQLLLEDCMG DYQYDQLELI NGLQTDRSHD HLLESSFLSP CRSKLFQEIH 180 YSTSCNLVDN AFPHSEHFNS TCLESLMELG EFCSLLPEAT AGHKNR |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| TrEMBL | A0A167V8X0 | 9e-58 | A0A167V8X0_PICAB; Transcription factor MYB29 | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G13540.1 | 5e-13 | myb domain protein 5 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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