PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00007051-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 229aa    MW: 26035.9 Da    PI: 4.231
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00007051-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.44.2e-141665255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++kG+r ++ +g+W++eIr p++   r +++lg++ tae+Aa+a +aa  +l+g
  PSME_00007051-RA 16 KFKGIRLRE-WGKWLSEIRMPRS---REKIYLGSYKTAEQAARAFDAASYCLRG 65
                      89******9.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-251575IPR001471AP2/ERF domain
CDDcd000182.04E-241675No hitNo description
SuperFamilySSF541717.19E-181675IPR016177DNA-binding domain
PROSITE profilePS5103220.0471673IPR001471AP2/ERF domain
SMARTSM003801.3E-241679IPR001471AP2/ERF domain
PfamPF008477.4E-71665IPR001471AP2/ERF domain
PRINTSPR003677.3E-71728IPR001471AP2/ERF domain
PRINTSPR003677.3E-73955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MENPRPEEHH GQTSRKFKGI RLREWGKWLS EIRMPRSREK IYLGSYKTAE QAARAFDAAS  60
YCLRGPDAKF NFPDSVPSIP SASSLSHQQI QTVAAEYALK ELPLSSPSRQ DNIDIKSEEK  120
PSLSSSVCET ELSSDDLQMP EELEFWKSLF AESDGAQYMN LEKIPSIDES WALEFWKSLL  180
AGSDGAEYLN LENIPSMDEA WTLELTPTFQ DEEVDMSVDP TALWNFQDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-131173972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016720476.12e-36PREDICTED: ethylene-responsive transcription factor ERF017-like, partial
STRINGXP_009615403.12e-35(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.17e-29ERF family protein