PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00007117-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

LBD

Protein Properties

Length: 165aa MW: 19124.7 Da PI: 5.6672

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00007117-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.5	1.7e-41	8	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaC++lrr+C+++C +apyfp ++p+kfa vh++FGasn+ kll+++p ++r+da++s+vyeA+ar+rdPvyG+vg++ lq+q+ +l+++ PSME_00007117-RA 8 PCAACRLLRRRCSEECNFAPYFPRDDPQKFASVHRIFGASNINKLLQDIPIDQRSDAVNSMVYEAHARIRDPVYGCVGTVCWLQKQMLNLQSQ 100 7****************************************************************************************** PP DUF260 94 lallkee 100 la++++e PSME_00007117-RA 101 LASAQAE 107 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.558	7	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.6E-41	8	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MTEVIMFPCA ACRLLRRRCS EECNFAPYFP RDDPQKFASV HRIFGASNIN KLLQDIPIDQ 60 RSDAVNSMVY EAHARIRDPV YGCVGTVCWL QKQMLNLQSQ LASAQAEITR LRIMQQNTNY 120 YYDDFITDLT VHRIMKNPNS PDEYYGQQLS SSMFLDAQES FNSMD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-43	8	110	11	113	LOB family transfactor Ramosa2.1
5ly0_B	4e-43	8	110	11	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022724417.1	3e-54	LOB domain-containing protein 4-like
Swissprot	Q8LBW3	1e-49	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A2P5CCR0	7e-53	A0A2P5CCR0_TREOI; Lateral organ boundaries domain containing protein
STRING	Gorai.011G051200.1	2e-53	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	4e-42	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]