PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00007197-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 345aa    MW: 38305.9 Da    PI: 6.3906
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00007197-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.32e-062502891255
                       HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       RR++i +++  L++l+P +    sk   K+ iL + ++Y++sLq
  PSME_00007197-RA 250 RREKISERMKFLQDLVPGC----SKDTGKVVILDEIINYVQSLQ 289
                       9*****************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.204238288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0036249294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-13249307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-12250299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.64E-8250293No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
IPTTNKQSPG IEKELVALNE WREIGMVGER KYPWKTKEVN TFDYVPYKSR ESCKISCFGV  60
GSGSLNLSES AGAPFHRSVI DNSAMSRIPR PNMAELTKVS DTSLSKEEFY AAETGAGRLS  120
RSSTPGHGTS GNESDDAKVS TAHEESSSSD QNTSEAAPNG FNGRNRKQIQ KDKGKDFASL  180
QAEKETQITE AVDGLKGMKY KTVEGVKEKD DVKYKVEQNA SAKIGEGSPK QTKYNIQTSE  240
PPKEDYIHVR REKISERMKF LQDLVPGCSK DTGKVVILDE IINYVQSLQR QVEFLSMKLV  300
AVNPWMEFNV EGILAKDMLQ SQGSSPTMLS HVWDNELQSV VQMGF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1131510.0BT113151.1 Picea glauca clone GQ03326_F21 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006848450.11e-60transcription factor bHLH78
TrEMBLB8LLM26e-68B8LLM2_PICSI; Uncharacterized protein
STRINGERN100314e-60(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.21e-39bHLH family protein