PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00007254-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 550aa    MW: 61599.2 Da    PI: 6.7468
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00007254-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.47.1e-15324370455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  A+eY+k+L+
  PSME_00007254-RA 324 NHVLAERRRREKLNERFIILRTLVPFV-----TKMDKASILGDAIEYVKQLR 370
                       7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.7E-21271IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474597.46E-19320386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.688320369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.31E-14323373No hitNo description
Gene3DG3DSA:4.10.280.101.6E-18324389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-12324369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-17326375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
RLPGRALAKR HHVWLSQANE ADSKLFSRAI LAKSARIQTV ACIPLADGVL EIGSTELIRE  60
DIGLIHQVTS LLADHSKPVC SEQSTSNPHS ENASRVLPQD QISMQPPDGI VFEEQNVKAM  120
EYNSDNAHEN APLPMQVSGL QSEKTVTEFG QNGSEVMQLD MSPEDCSNDI GSELQVTGGN  180
SSMQVKHSTN AWPDMSHGLQ SSGTQQYLDQ GSDDESGHYS KTVSTILQQQ QLSQWTDPTT  240
LQLVRGNINP QDITQRCAFS CWTGNGGVLV QKAANPHPQW VLKYILFSVP TLHSRDRDDS  300
SPKVREGENG CRTRRNSQDD ITVNHVLAER RRREKLNERF IILRTLVPFV TKMDKASILG  360
DAIEYVKQLR RRINDLEVRS KQMDAEIKKN AETRKQLSTT SQEKIVRQKS GGATNNNNVD  420
QELVSSCRNF SDQSDQQQYK ISRFEKRKIR VLERSEPLTI IDDCSTDVQV SIIEHEALVE  480
LQCPWREGLL LDIMQTLSNL LFETHSVQSS VVNDTFVAKI RAKVKVASIG DKPTITKVKN  540
AVLECIPSRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-13323389773Transcription factor MYC2
5gnj_B1e-13323389773Transcription factor MYC2
5gnj_E1e-13323389773Transcription factor MYC2
5gnj_F1e-13323389773Transcription factor MYC2
5gnj_G1e-13323389773Transcription factor MYC2
5gnj_I1e-13323389773Transcription factor MYC2
5gnj_M1e-13323389773Transcription factor MYC2
5gnj_N1e-13323389773Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1328333ERRRRE
2329334RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU1312260.0KU131226.1 Picea abies transcription factor bHLH-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A167V9480.0A0A167V948_PICAB; Transcription factor bHLH-1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.37e-51bHLH family protein