PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00007285-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 487aa    MW: 54528.4 Da    PI: 6.4287
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00007285-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.88.7e-21217266255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae+Aa+a+++a+++++g
  PSME_00007285-RA 217 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEDAARAYDEAALRFRG 266
                       7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-14217266IPR001471AP2/ERF domain
PROSITE profilePS5103225.554217274IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-22217275IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-33217276IPR001471AP2/ERF domain
SMARTSM003801.2E-37217280IPR001471AP2/ERF domain
PRINTSPR003678.7E-12218229IPR001471AP2/ERF domain
CDDcd000184.35E-28225275No hitNo description
PRINTSPR003678.7E-12240256IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
VADQAAGGRP VPAMRGDHEV KEEKELTAPE ENLYFSARGS RPQQEAEMSA MVSALSQVVA  60
GTANNSSVGQ EWPLPSTGVK RERENENENE NYENYERLNY PIAREMQGRG VYYNYNNPSV  120
HAAQFMQQGS NIISRPRMFQ HHMQQESAIR PPPPQPPGMW QTTIQSPPAV ISPRSQAATA  180
TMRSAAPQPQ PTASSSEETQ QELSTGEAVV SVERRRRYRG VRQRPWGKWA AEIRDPHKAA  240
RVWLGTFDTA EDAARAYDEA ALRFRGSRAK LNFPEEAQLI LRPPVVQNIN NPPPLHITTQ  300
NLPPPPPPSR FGEGGGAAAM SPLQQRSQIQ SQEVNFPIEF YQYARLLQNP EPEPMPEPEQ  360
LSMQPLLRQY LSAMSQPAAQ WNHGQTSPSE NFWNLNPAIP SQTDEPRPTV SDTDRSPWPV  420
YLNRPPAPQP PNLSDSTDSG YLPNFPNVRR SQSMISESDR SREIGQSRQS PSSGPSTWQQ  480
LRSRPPE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-24216274463ATERF1
3gcc_A5e-24216274463ATERF1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212217ERRRRY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.18e-20ethylene response factor 110