PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00007348-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HB-other
Protein Properties Length: 166aa    MW: 18585.5 Da    PI: 10.763
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00007348-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox171e-0553753456
                      HHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox 34 AkklgLterqVkvWFqNrRakek 56
                      A k+ ++ +q+ +WFqNrR  ++
  PSME_00007348-RA 53 AGKVTVQWKQIWNWFQNRRHAQR 75
                      455688899**********8777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.67E-73179IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-44781IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MGRPPLGGAP SFRFLPMEIA DMEMALEESR GANPPRDAVI YLAEKFSAAR EHAGKVTVQW  60
KQIWNWFQNR RHAQRSKSAK MAVKLNSIPS SSDDSLAKRA ATNSFASLSG YLVMESNLAQ  120
RRLKLSPLPD KLGDLLRPPI SDIPSTFLLL FVLRSSSNFG AMYWIF
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1151551e-149BT115155.1 Picea glauca clone GQ03610_G04 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012074200.13e-29protein SAWADEE HOMEODOMAIN HOMOLOG 2
SwissprotQ8RWJ72e-21SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLD5ACD88e-38D5ACD8_PICSI; Uncharacterized protein
STRINGXP_010275166.12e-28(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.38e-24sequence-specific DNA binding transcription factors;sequence-specific DNA binding