PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00007454-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family TCP
Protein Properties Length: 157aa    MW: 16608.4 Da    PI: 11.1179
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00007454-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP81.91.7e-251290366
               TCP  3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............s 66
                      +k+ +++++hTkv+gR+RRv ++a  a ++F+L+ e G+++d++ti+WLl++ k ai ++ gt               +
  PSME_00007454-RA 12 VKRPSTKDRHTKVNGRGRRVIIPAVSAVQIFQLTCEFGHKSDGETIQWLLNKVKLAIMAAIGTsvvptfplpivglgtG 90
                      6999***********************************************************5555555555555552 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.7E-201676IPR005333Transcription factor, TCP
PROSITE profilePS5136919.9321771IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MEGIHTRNAL VVKRPSTKDR HTKVNGRGRR VIIPAVSAVQ IFQLTCEFGH KSDGETIQWL  60
LNKVKLAIMA AIGTSVVPTF PLPIVGLGTG TIPAFPVSIL GLGTGTFSAL PMPIVAHVSS  120
NPSKLQQHPQ VPPSSHGILA LSAIGSSVRM GFDFQGE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541424.12e-27transcription factor TCP11
RefseqXP_028196567.12e-27transcription factor TCP11-like
STRINGGLYMA13G20710.27e-27(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.18e-27TCP family protein