PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00007487-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

LBD

Protein Properties

Length: 129aa MW: 14294.3 Da PI: 4.6617

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00007487-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	30.4	1.1e-09	35	82	4	51
DUF260 4 aCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpe 51 Ck+ +r+C ++C++ ++++ +kf ++h++FGa nv+kl++ +e PSME_00007487-RA 35 QCKMEERECLDNCTMLYRLASDYLHKFSILHQVFGACNVIKLIQVERE 82 6*****************************************997554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	7.3E-8	35	80	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MEEHEREEVP VMQLTSNVTE NPRAQSLSGG AFHEQCKMEE RECLDNCTML YRLASDYLHK 60 FSILHQVFGA CNVIKLIQVE RERLRGPGRV ARAVVGGVVG ICAPTGGDFG GDVDAISLDK 120 IEQCLDDMI

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF087617	2e-36	EF087617.1 Picea sitchensis clone WS02730_N15 unknown mRNA.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	5e-08	LBD family protein