PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00007561-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 129aa    MW: 14709.9 Da    PI: 7.7337
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00007561-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260106.52.2e-335105199
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                       aC aCk+lrrkC++d ++apyf a+q  +++f  +hk+FG sn +k+l +++ ++r+da+ s++y+A+ar+++P++G+++  ++lq q+++lk
  PSME_00007561-RA   5 ACGACKFLRRKCENDYIFAPYFTADQigMEQFSKIHKVFGCSNFCKMLMRVDVDKRHDAVGSILYQANARIQNPIHGCLSKCFALQDQIDNLK 97 
                       7***********************99767**************************************************************** PP

            DUF260  92 aelallke 99 
                       ++l+ + +
  PSME_00007561-RA  98 EQLKIAYA 105
                       **998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.9214107IPR004883Lateral organ boundaries, LOB
PfamPF031952.9E-325103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MAGQACGACK FLRRKCENDY IFAPYFTADQ IGMEQFSKIH KVFGCSNFCK MLMRVDVDKR  60
HDAVGSILYQ ANARIQNPIH GCLSKCFALQ DQIDNLKEQL KIAYAELELL EREEPSFQRF  120
GGPFFGGQN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-2921078111LOB family transfactor Ramosa2.1
5ly0_B9e-2921078111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9SRV33e-32LBD20_ARATH; LOB domain-containing protein 20
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.18e-34LOB domain-containing protein 20