PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00007562-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 129aa    MW: 14772 Da    PI: 8.4935
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00007562-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601154.7e-365105199
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                       aC aCk+lrrkC+++C++apyf a+q  +++f  +hk+FG++n +k+l +++ ++r+da+ s++y+A+ar+++P++G+++  ++lq q+++lk
  PSME_00007562-RA   5 ACGACKFLRRKCENNCIFAPYFTADQngMEQFSKIHKVFGRRNFCKMLMRVDVDKRHDAVGSILYQANARIQNPIHGCLSKCFALQDQIDNLK 97 
                       7*********************9999555**************************************************************** PP

            DUF260  92 aelallke 99 
                       ++l+ + +
  PSME_00007562-RA  98 EQLKIAYA 105
                       **998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.2624107IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-345103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MAGQACGACK FLRRKCENNC IFAPYFTADQ NGMEQFSKIH KVFGRRNFCK MLMRVDVDKR  60
HDAVGSILYQ ANARIQNPIH GCLSKCFALQ DQIDNLKEQL KIAYAELELL EREEPSFQRF  120
GGPFFGGQN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-3021078111LOB family transfactor Ramosa2.1
5ly0_B9e-3021078111LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9SRV32e-33LBD20_ARATH; LOB domain-containing protein 20
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.15e-35LOB domain-containing protein 20