PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00007645-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 225aa    MW: 25061.7 Da    PI: 5.3313
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00007645-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91.1e-172575155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++ykG+r +k +g+Wv+eIr p++   rk+ +lg++ tae+Aa+a++ a  +l+g
  PSME_00007645-RA 25 CQYKGIRLRK-WGSWVSEIRLPRS---RKKLWLGSYKTAEQAARAYDVAVCCLRG 75
                      68******99.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-102575IPR001471AP2/ERF domain
CDDcd000181.13E-262584No hitNo description
Gene3DG3DSA:3.30.730.102.9E-282684IPR001471AP2/ERF domain
PROSITE profilePS5103221.0222683IPR001471AP2/ERF domain
SMARTSM003803.8E-302689IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-192684IPR016177DNA-binding domain
PRINTSPR003676.2E-82738IPR001471AP2/ERF domain
PRINTSPR003676.2E-84965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MEEIPPQEHA IADALAGKNR AERSCQYKGI RLRKWGSWVS EIRLPRSRKK LWLGSYKTAE  60
QAARAYDVAV CCLRGPNARF NFPNCVPFIA SASSLSRHEI QLAAARHATS LEQVPSILPS  120
AQYNNNQNGN ANNNAREYSA SPSRSASVQE STVSLMNCQH QQEHALALWE SEFAGSDDSV  180
AKNLESLPSI GEASAMNLEQ HHEQLEEEDI SDFLDFTNLW DFGDV
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010099089.17e-34ethylene-responsive transcription factor ERF017
SwissprotQ84QC26e-34ERF17_ARATH; Ethylene-responsive transcription factor ERF017
STRINGXP_010099089.13e-33(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.15e-36ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]