PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00007752-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C3H
Protein Properties Length: 480aa    MW: 51948.8 Da    PI: 8.3158
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00007752-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.85.9e-115480127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                      ++++ C +++rtG C +G +C+++H+p
  PSME_00007752-RA 54 PGEPDCTYYMRTGNCGFGLSCRYNHPP 80
                      5789*********************96 PP
2zf-CCCH406.4e-13100125227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++C+++++tGtCk+G++CkF+H++
  PSME_00007752-RA 100 GQPECQYYLKTGTCKFGATCKFHHPR 125
                       5799********************96 PP
3zf-CCCH382.8e-12147171327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       +++C +++rtG+CkyG++CkF+H++
  PSME_00007752-RA 147 EKECAYYLRTGQCKYGATCKFHHPQ 171
                       679********************97 PP
4zf-CCCH31.72.6e-10317342227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++C+f+++tG Ck+G +C+++H++
  PSME_00007752-RA 317 GQSECQFYMKTGDCKFGMTCRYHHPK 342
                       7899********************96 PP
5zf-CCCH291.8e-09366388527
                       --SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                        C+ff r+G+Ck+G++Ck+ H++
  PSME_00007752-RA 366 ACSFFTRFGICKFGPTCKYDHPM 388
                       7********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.9E-65380IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1925381IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-85580IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.16E-55881IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-698125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.41398126IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-10101125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6102127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-5104125IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5144171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.375144172IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6144171IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-10147171IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-5150170IPR000571Zinc finger, CCCH-type
SMARTSM003560.0012315342IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.192315343IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-7317342IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5318344IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-4321342IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-6361388IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.723361389IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-5364389IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-7365388IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MPRQRGLVID PDGWQQHGRP RGEIAGVEEA MWQMGLHQQH ESMEADNGPY PERPGEPDCT  60
YYMRTGNCGF GLSCRYNHPP NRKQVAAAAR NKGEYPERLG QPECQYYLKT GTCKFGATCK  120
FHHPRDKAGS TGRAAINVLG YPLRPNEKEC AYYLRTGQCK YGATCKFHHP QPVGALIPMR  180
GSSLFTPVQS PTTPGPQPYP GGVPTWPIQR ASFIQSPRWQ GPSSYPPLIL PQGMVSVPSW  240
STYPQGQVGS ISSSDAQQQA IGAGLVYGPT SQTDPMASGI QGTFSPFPPG SPAMGPPTLQ  300
LPSSSAQRES MFPERPGQSE CQFYMKTGDC KFGMTCRYHH PKERIIPMPN CVLNSLGLPL  360
RPGAQACSFF TRFGICKFGP TCKYDHPMGH SSYSQSISSP IDVPVGRHQI GSASATLSSI  420
SLAPDLVVDS GGGQSIEHSS TAEARQQSSG SAGLCMNQLS ILSTGCISQA NIVCSELIWL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0708020.0BT070802.1 Picea sitchensis clone WS02750_K24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006480413.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_024037223.10.0zinc finger CCCH domain-containing protein ZFN-like
RefseqXP_024955986.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_024955987.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF91e-169ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLC0PR620.0C0PR62_PICSI; Uncharacterized protein
STRINGXP_006480413.10.0(Citrus sinensis)
STRINGXP_006428579.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-127zinc finger protein 1