PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00007850-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 302aa    MW: 34344.3 Da    PI: 5.8844
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00007850-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox35.81.4e-1151107354
                       --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHH CS
          Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRak 54 
                       kRt    +q ++L   Fe+   +ps++++++++++l    ++++++V++WF+N +++
  PSME_00007850-RA  51 KRTEEDINQKRILIPKFESgMVKPSRHQIKRITAQLqefgQVEDANVFYWFHNTKYR 107
                       78999999**********99**********************************997 PP
2Wus_type_Homeobox63.16e-2152107560
  Wus_type_Homeobox   5 RWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaR 60 
                        R     +Q +iL   ++sG++ P++++i+rita+L+e+G++ed+NVfyWF N k R
   PSME_00007850-RA  52 RTEEDINQKRILIPKFESGMVKPSRHQIKRITAQLQEFGQVEDANVFYWFHNTKYR 107
                        5555668999*******************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.1E-551111IPR009057Homeodomain-like
PfamPF000463.0E-951107IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDNMKSKRRQ SWTSMFKVKP STSDNQGYAS SNSSAISVQR PRYEAEVETN KRTEEDINQK  60
RILIPKFESG MVKPSRHQIK RITAQLQEFG QVEDANVFYW FHNTKYRIFN RVERTEKNTK  120
AIINVASNTA DSLYNTRESY SSYEDFHMQM NEEMRNDQCS SMQAVATAAG IPVEVRVGSI  180
NVRDAFGENA VLLHSTGEPV LVNEWGFTLE CLQQGAEYYV EDFHMQMNEE MSNDQCSSMQ  240
AVATAAGVFN EGTGRSFSYE HLIHLLINKI PLEVPVGSIN VRDAFGENAV FASLHRRAGF  300
SE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5LMH91e-66D5LMH9_PICAB; Putative wuschel homeobox protein WOX8/9
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45980.11e-17WUSCHEL related homeobox 8