PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00007949-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

SBP

Protein Properties

Length: 958aa MW: 107277 Da PI: 7.5763

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00007949-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	46.1	1.3e-14	95	126	47	78
SSEEETTT--SS--S-STTTT-------S--- CS SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkqa 78 +fh l efDe+krsCrrrLa+hn+rrrk+qa PSME_00007949-RA 95 RKFHPLGEFDEGKRSCRRRLAGHNKRRRKTQA 126 58***************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	13.144	29	124	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	1.6E-4	87	111	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.2E-8	95	123	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	8.44E-11	96	128	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	1.21E-6	741	847	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	6.3E-5	741	836	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.94E-6	743	841	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 958 aa Download sequence Send to blast
MENEAGPRVA YFSHPFPPGG FVQQKHDGSY RQQVRNAGWN AESWEWDSVR FVAKPADEKS 60 HGREGSNVHN VEAPARTLHL GTYDSTNMRP ENNKRKFHPL GEFDEGKRSC RRRLAGHNKR 120 RRKTQAEEIG FKGFITGDEN GAVKNYDISS LISVLSQQHE ASNSVDKLID RRSLDKEHLI 180 QCLNKLKSVP SSGDFGTTQP QLVIDLNDSQ NLQPQAQAQD AKGKALQRND RQSPVLESDM 240 LKILSTMTER SPEALSLLQR SLKAQKTLNS HNSNDQQTIN QQFPGMSSTL IASQNIDNVA 300 VSAGHENVLN YLCRGHLAWP VHHLPHPNLV ASKQYITEDS CNPLEERFCS RSPSLSPPVV 360 HKLFPLHSKD KDKEIDSVSV SDEDELSPDQ SPEDDGLCKR LSNSGKRNDQ HNISSSPLAG 420 SDLRINGYTS SGSDQSPTSS NSDTKERTSR IIFKLFGKNP SDFPQTLRTQ LRGDLQERMK 480 LLLFKDSCNS FWKNGRIIVQ AEQQLALFKD GKIRFCRSSR SLDAPEICSV WPIAVVAGEE 540 TRLVLRGHNL TTPGTKILCA YRGKYISQNV SEDYQVGSSA FFSNATTIEH RFPGGPANVL 600 GRFFIEVERG FKGNNFPVIV ADSAICRELR TLEDDFEAFC EDKVTDGHSK PHSRDDVISG 660 IQEEVVTFLN ELGWLFQRNS YSKEGPFSPK DSPARFKFLL TYAVERDWNS LLKKVLDILF 720 NMYGEEEGSV REAFNIFSEI NLLHRAVKRN CRQVVDMLLC YIPSSNAYRN IAFRPDVIGP 780 GHLTPLHVAA SMQNAEDIVD ALTNDPLKIG LRAWTTALDA NQQTPHAYAL MRNNHTYNRL 840 VGEKLADQIR TQVSITISKE PFLNETAMQG ADGTVGLNIE LSQDTMQNLP SSCSKCMRLS 900 SNRASRLASY HGSMYRPFVL SVVSIATVCV CVCLLFKTLP TVGSVAPFKW ENIQSGWD

Sequence ? help Back to Top

Protein Sequence Length: 958 aa Download sequence Send to blast

MENEAGPRVA YFSHPFPPGG FVQQKHDGSY RQQVRNAGWN AESWEWDSVR FVAKPADEKS  60
HGREGSNVHN VEAPARTLHL GTYDSTNMRP ENNKRKFHPL GEFDEGKRSC RRRLAGHNKR  120
RRKTQAEEIG FKGFITGDEN GAVKNYDISS LISVLSQQHE ASNSVDKLID RRSLDKEHLI  180
QCLNKLKSVP SSGDFGTTQP QLVIDLNDSQ NLQPQAQAQD AKGKALQRND RQSPVLESDM  240
LKILSTMTER SPEALSLLQR SLKAQKTLNS HNSNDQQTIN QQFPGMSSTL IASQNIDNVA  300
VSAGHENVLN YLCRGHLAWP VHHLPHPNLV ASKQYITEDS CNPLEERFCS RSPSLSPPVV  360
HKLFPLHSKD KDKEIDSVSV SDEDELSPDQ SPEDDGLCKR LSNSGKRNDQ HNISSSPLAG  420
SDLRINGYTS SGSDQSPTSS NSDTKERTSR IIFKLFGKNP SDFPQTLRTQ LRGDLQERMK  480
LLLFKDSCNS FWKNGRIIVQ AEQQLALFKD GKIRFCRSSR SLDAPEICSV WPIAVVAGEE  540
TRLVLRGHNL TTPGTKILCA YRGKYISQNV SEDYQVGSSA FFSNATTIEH RFPGGPANVL  600
GRFFIEVERG FKGNNFPVIV ADSAICRELR TLEDDFEAFC EDKVTDGHSK PHSRDDVISG  660
IQEEVVTFLN ELGWLFQRNS YSKEGPFSPK DSPARFKFLL TYAVERDWNS LLKKVLDILF  720
NMYGEEEGSV REAFNIFSEI NLLHRAVKRN CRQVVDMLLC YIPSSNAYRN IAFRPDVIGP  780
GHLTPLHVAA SMQNAEDIVD ALTNDPLKIG LRAWTTALDA NQQTPHAYAL MRNNHTYNRL  840
VGEKLADQIR TQVSITISKE PFLNETAMQG ADGTVGLNIE LSQDTMQNLP SSCSKCMRLS  900
SNRASRLASY HGSMYRPFVL SVVSIATVCV CVCLLFKTLP TVGSVAPFKW ENIQSGWD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ083616	1e-132	FJ083616.1 Pinus taeda isolate 3988 anonymous locus 0_8823_01 genomic sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	1e-124	squamosa promoter binding protein-like 14