PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00008023-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 205aa    MW: 24076.3 Da    PI: 5.6826
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00008023-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.44e-0688158455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC......................TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkas...................kapskKlsKaeiLekAveYIksLq 55 
                       +hn  Er RR++i + +  L++l+P +                        k   K  +L + ++YI+ Lq
  PSME_00008023-RA  88 NHNLEERVRREKISEHMKLLQDLVPGRNkrpenerrhvvhqqanlekLLFLKITGKEVMLDEIINYIQALQ 158
                       7*************************666999999999999888886666666888888999999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.54E-682162No hitNo description
SuperFamilySSF474593.79E-1184174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.17984157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-884163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-590163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MEPTFTVFDI VTYKTKETYD TERNGNNYKV GESTKDKDEI NDKLEESNSA ETIEIRPKQT  60
VDDAKPSFFP VKQAYIHLRE RRGQATDNHN LEERVRREKI SEHMKLLQDL VPGRNKRPEN  120
ERRHVVHQQA NLEKLLFLKI TGKEVMLDEI INYIQALQCQ LEMSHVWDDE FQIAVDMAMD  180
QNKPPPLKSW GLYGFLLTGQ MKVEL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NUY02e-50A9NUY0_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26260.34e-28cryptochrome-interacting basic-helix-loop-helix 5