PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00008095-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 159aa MW: 18101.5 Da PI: 9.7647

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00008095-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	54.2	4.8e-17	8	63	54	108
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvf 108 +ekewyfF++rd+ky++g+r++ra+ sgyWkatg dk++ +k +++ v k+t vf PSME_00008095-RA 8 GEKEWYFFTPRDRKYPNGSRPKRAAGSGYWKATGADKPINAKgGKKRVVAKRTSVF 63 689**************************************965666888998888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	20.965	1	100	IPR003441	NAC domain
SuperFamily	SSF101941	1.83E-17	3	62	IPR003441	NAC domain
Pfam	PF02365	7.5E-6	11	64	IPR003441	NAC domain
SuperFamily	SSF47661	2.63E-11	59	142	IPR010989	t-SNARE
Gene3D	G3DSA:1.20.58.70	2.5E-11	60	146	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016192	Biological Process	vesicle-mediated transport
GO:0016020	Cellular Component	membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MTDKALFGEK EWYFFTPRDR KYPNGSRPKR AAGSGYWKAT GADKPINAKG GKKRVVAKRT 60 SVFDDPTVQI QELTAVIKQD ITALNYAVTD LQILCNSQNE SGNTSKHTTE HSTTVVDNLK 120 TRLMSTTKEF KEVLTMRTEM EKLEEQFDEV YVEAIKSRK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-24	1	63	62	122	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-24	1	63	62	122	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-24	1	63	62	122	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-24	1	63	62	122	NO APICAL MERISTEM PROTEIN
3swm_A	2e-24	1	63	65	125	NAC domain-containing protein 19
3swm_B	2e-24	1	63	65	125	NAC domain-containing protein 19
3swm_C	2e-24	1	63	65	125	NAC domain-containing protein 19
3swm_D	2e-24	1	63	65	125	NAC domain-containing protein 19
3swp_A	2e-24	1	63	65	125	NAC domain-containing protein 19
3swp_B	2e-24	1	63	65	125	NAC domain-containing protein 19
3swp_C	2e-24	1	63	65	125	NAC domain-containing protein 19
3swp_D	2e-24	1	63	65	125	NAC domain-containing protein 19
4dul_A	2e-24	1	63	62	122	NAC domain-containing protein 19
4dul_B	2e-24	1	63	62	122	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Vesicle trafficking protein that functions in the secretory pathway. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010915024.1	8e-44	syntaxin-32
Swissprot	Q9LK09	7e-31	SYP32_ARATH; Syntaxin-32
TrEMBL	A0A0D6QXR7	1e-43	A0A0D6QXR7_ARACU; Uncharacterized protein
STRING	Pavir.J13548.1.p	1e-43	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77450.1	1e-26	NAC domain containing protein 32

Publications ? help Back to Top
Kalde M,Nühse TS,Findlay K,Peck SC The syntaxin SYP132 contributes to plant resistance against bacteria and secretion of pathogenesis-related protein 1. Proc. Natl. Acad. Sci. U.S.A., 2007. 104(28): p. 11850-5 [PMID:17592123]