PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00008190-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family AP2
Protein Properties Length: 367aa    MW: 40979.8 Da    PI: 8.7557
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00008190-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.39.4e-142777155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      s+y+GV+ +k  grW+A+   +     +k+++lg f+++e+Aa+a+++a+ + +g
  PSME_00008190-RA 27 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEEDAARAYDKAAIRCNG 77
                      89********.7******5553..2.26**********************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.63E-172786IPR016177DNA-binding domain
PfamPF008474.3E-92777IPR001471AP2/ERF domain
CDDcd000182.13E-262787No hitNo description
PROSITE profilePS5103215.832885IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-162885IPR001471AP2/ERF domain
SMARTSM003805.0E-332891IPR001471AP2/ERF domain
PRINTSPR003673.2E-62940IPR001471AP2/ERF domain
PRINTSPR003673.2E-66787IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MGTGKLSKEE FVHILRRQST GFSRGSSKYR GVTLHKCGRW EARMGQFLGK KYIYLGLFDS  60
EEDAARAYDK AAIRCNGKEA VTNFDPSTYE KEILEEGREN QSCEQNLDLS LGIGNVPTQL  120
KRSSSYKPRA ITSLTVAFSV VEEDSQLNRI GAVTHSNLSQ DSKSFSCLTS KGGENAVPEF  180
QSLPRGHAVY WNSQMLQVPD AMKYRESEAH TREDNVYEQT AISGNQFYPD HLGNCKRLNM  240
MESLKEQSFG VPASTVSVWP KKQQQSGWTW QLHASGSTTP LFTTTTTRSS SSGFSPQMHT  300
AFVPPTHRSH NMGLHWAAQS TDPCMLQTPS LHMTNRLTNG TDSGDHMVGL TLDFPGKKMK  360
RTSVQRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2539710.0AF253971.1 Picea abies APETALA2-related transcription factor 2 (AP2L2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ9FV330.0Q9FV33_PICAB; APETALA2-related transcription factor 2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-54AP2 family protein