PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00008237-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 180aa MW: 21005.2 Da PI: 8.6914

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00008237-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	98	1.3e-30	23	128	2	107
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 pGfrF Pt eel+++yLkk+++g + l+++ +i+++d+y+++Pw+Lp +++ ek+w+fF++r++k+ r++r t sgyWkatg+d+++ PSME_00008237-RA 23 IPGFRFYPTKEELLSFYLKKRIQGGQqLNFDIIIPTLDMYRYDPWELPgLAIDVAEKQWFFFVPRESKKC--ARQTRLTVSGYWKATGSDRAI 113 69*******************9985666556***********77888999*****99875..7**************** PP NAM 93 lskkgelvglkktLv 107 ++ e +glkktL+ PSME_00008237-RA 114 RNELLECIGLKKTLI 128 99999******95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.89E-31	15	141	IPR003441	NAC domain
PROSITE profile	PS51005	30.327	22	180	IPR003441	NAC domain
Pfam	PF02365	2.0E-15	24	127	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MAMAILEEIY NDAGAFKGEL TVIPGFRFYP TKEELLSFYL KKRIQGGQQL NFDIIIPTLD 60 MYRYDPWELP GLAIDVAEKQ WFFFVPRESK KCARQTRLTV SGYWKATGSD RAIRNELLEC 120 IGLKKTLIKN TDMVLCRIYK KAASQKSMEQ RTESVARDEY EQNCHSISLD DSLSHRKCWR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-25	19	144	14	168	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-25	19	144	14	168	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-25	19	144	14	168	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-25	19	144	14	168	NO APICAL MERISTEM PROTEIN
4dul_A	1e-25	19	144	14	168	NAC domain-containing protein 19
4dul_B	1e-25	19	144	14	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008791987.1	1e-39	NAC domain-containing protein 22-like
Refseq	XP_015643570.1	3e-39	NAC domain-containing protein 22-like
Swissprot	Q10S65	1e-36	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A075M5N5	8e-66	A0A075M5N5_9SPER; NAC domain protein
STRING	XP_008791987.1	6e-39	(Phoenix dactylifera)
STRING	ORUFI06G29930.1	1e-38	(Oryza rufipogon)
STRING	OS06T0726300-00	1e-38	(Oryza sativa)
STRING	ONIVA06G30950.1	1e-38	(Oryza nivara)
STRING	ORGLA06G0236900.1	1e-38	(Oryza glaberrima)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	3e-38	NAC domain containing protein 35

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]