PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00008240-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 218aa    MW: 25135 Da    PI: 6.5115
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00008240-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM88.99.1e-28221322112
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        pGfrF Pt+eel+ +yLkk+++g++ l+++ +i ++diy+++P +Lp  +++  ek+w+fF++r++k+    r +r t sgyWkat +d+ +
  PSME_00008240-RA  22 IPGFRFYPTEEELLRFYLKKRIQGSHqLKFDIIILTLDIYRYDPCELPgLAIDVAEKQWFFFVPRESKKC--ARLTRLTVSGYWKATSSDRGI 112
                       69**********************9956665569999***********77888999*********99875..7******************** PP

               NAM  93 lskkgelvglkktLvfykgr 112
                         +  e +glkktL     r
  PSME_00008240-RA 113 RIELLECIGLKKTLKVLALR 132
                       **99999*******877444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-2614130IPR003441NAC domain
PROSITE profilePS5100528.11321184IPR003441NAC domain
PfamPF023652.5E-1523137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MTMAILDEIY NDGAFKGELT VIPGFRFYPT EEELLRFYLK KRIQGSHQLK FDIIILTLDI  60
YRYDPCELPG LAIDVAEKQW FFFVPRESKK CARLTRLTVS GYWKATSSDR GIRIELLECI  120
GLKKTLKVLA LRKENWLLIS ARDEYEKKCH SIYLDGSSCQ SSPMTEATSP MTESRGVYLN  180
LSKMNNEDNQ IQCVEHIMSS EETLVWNVGG IVPTHSYI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-211814214141NO APICAL MERISTEM PROTEIN
1ut4_B3e-211814214141NO APICAL MERISTEM PROTEIN
1ut7_A3e-211814214141NO APICAL MERISTEM PROTEIN
1ut7_B3e-211814214141NO APICAL MERISTEM PROTEIN
4dul_A3e-211814214141NAC domain-containing protein 19
4dul_B3e-211814214141NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020598401.13e-35NAC domain-containing protein 35-like, partial
RefseqXP_022897039.18e-35NAC domain-containing protein 35-like
TrEMBLA0A075M5N59e-53A0A075M5N5_9SPER; NAC domain protein
STRINGMigut.N00873.1.p3e-33(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.23e-35NAC domain containing protein 35