PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00008357-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 208aa    MW: 23823.4 Da    PI: 4.7615
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00008357-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.21.3e-152473255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++kG+r +k +grWv+eIr p++   r +++lg++ tae+Aa+a++a   + +g
  PSME_00008357-RA 24 QFKGIRMRK-WGRWVSEIRMPKS---REKIWLGSYETAEQAARAYDAGVYCVRG 73
                      69*****99.**********954...4*******************98877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.0E-282382IPR001471AP2/ERF domain
SMARTSM003802.9E-292487IPR001471AP2/ERF domain
CDDcd000189.32E-252483No hitNo description
SuperFamilySSF541711.05E-182483IPR016177DNA-binding domain
PROSITE profilePS5103220.8772481IPR001471AP2/ERF domain
PfamPF008471.6E-82566IPR001471AP2/ERF domain
PRINTSPR003671.8E-82536IPR001471AP2/ERF domain
PRINTSPR003671.8E-84763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MEKPSQEHHS RSSSDEDRGQ NCRQFKGIRM RKWGRWVSEI RMPKSREKIW LGSYETAEQA  60
ARAYDAGVYC VRGPNAKFNF PNSVPDIPSA SSLSRQQIQV AAAKYALDEI PSASACLSRY  120
NNKAKEKPAS QPRPSSVSET KWPCDSQQIL EALDLGLWES PFDENSDQNL EKIPSIEEAS  180
VLEFIPTWQE EQQPDDYIFF DPTDLWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-131982973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5ADJ91e-88D5ADJ9_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.18e-37ERF family protein