PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00008358-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 209aa    MW: 23959.6 Da    PI: 4.5705
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00008358-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.73.8e-152473255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++kG+r +k +grWv+eIr p++   r +++lg++ t e+Aa+a++a   + +g
  PSME_00008358-RA 24 QFKGIRMRK-WGRWVSEIRMPKS---REKIWLGSYETTEQAARAYDAGLYCVRG 73
                      69*****99.**********954...4*******************98888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-272382IPR001471AP2/ERF domain
CDDcd000184.88E-242483No hitNo description
SuperFamilySSF541712.94E-182483IPR016177DNA-binding domain
SMARTSM003807.9E-282487IPR001471AP2/ERF domain
PROSITE profilePS5103220.562481IPR001471AP2/ERF domain
PRINTSPR003676.0E-82536IPR001471AP2/ERF domain
PfamPF008478.1E-92567IPR001471AP2/ERF domain
PRINTSPR003676.0E-84763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MEKPSEEHHS RSSSDEDRGQ NCRQFKGIRM RKWGRWVSEI RMPKSREKIW LGSYETTEQA  60
ARAYDAGLYC VRGPNAKFNF PNSVPDIPSA SSLSRQQIQV AAAKYALDEI PSASPCLSNY  120
NNKAKEKPAS QPRPSSVSET KWPCDSQKIL EALDLGLWES PFDENSDQNL EKIPSIEEAS  180
VLEFIPTWQE EEEQQEDYIL LDPTDLWNF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5ADJ97e-89D5ADJ9_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.11e-36ERF family protein