PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00008363-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 240aa    MW: 27826.9 Da    PI: 4.6495
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00008363-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.64.8e-162473255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++kG+r +k +g Wv+eIr p++   r +++lg++ tae+Aa+a++aa  +l+g
  PSME_00008363-RA 24 QFKGIRMRK-WGTWVSEIRMPKS---REKIWLGSYKTAEQAARAYDAAVYYLRG 73
                      69*****99.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.3E-282383IPR001471AP2/ERF domain
SMARTSM003802.0E-282487IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-182483IPR016177DNA-binding domain
CDDcd000181.40E-242483No hitNo description
PROSITE profilePS5103220.6262481IPR001471AP2/ERF domain
PfamPF008471.7E-82573IPR001471AP2/ERF domain
PRINTSPR003671.4E-72536IPR001471AP2/ERF domain
PRINTSPR003671.4E-74763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MEKPSPKHNS RSPPDEDRRQ NYRQFKGIRM RKWGTWVSEI RMPKSREKIW LGSYKTAEQA  60
ARAYDAAVYY LRGPKAKFNF PDSVPAIPSV SSLSRQQIQV AAAKYALDEF SSTSPCKQNE  120
RNNNSKAKEK PASQSLPSVV SQTEWSCDSH QIFEALDLGL WESLFDENCD LNLEKIPSIE  180
EASVLEFIPT WQEEENHSDL NLEKIPSIEE ASVLEFIPTW QEEEHQEEYI FLDPTDFWSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1324811472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5ADJ93e-88D5ADJ9_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.11e-35ERF family protein