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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PSME_00008383-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 1899aa MW: 209170 Da PI: 7.2521 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 13.1 | 0.00029 | 1796 | 1821 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23
y+C C++ F++k +L+ H r+ +
PSME_00008383-RA 1796 YQCDteGCTMNFTTKQDLQLHKRNtC 1821
99********************9877 PP
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| 2 | zf-C2H2 | 10.7 | 0.0017 | 1820 | 1843 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHHT CS
zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23
+Cp Cgk+F ++ +L +H r+H
PSME_00008383-RA 1820 TCPikGCGKHFISHKYLLHHRRVH 1843
69999*****************99 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00545 | 2.7E-13 | 50 | 91 | IPR003349 | JmjN domain |
| PROSITE profile | PS51183 | 14.16 | 51 | 92 | IPR003349 | JmjN domain |
| Pfam | PF02375 | 4.3E-14 | 52 | 85 | IPR003349 | JmjN domain |
| PROSITE profile | PS51184 | 33.569 | 264 | 439 | IPR003347 | JmjC domain |
| SuperFamily | SSF51197 | 2.47E-26 | 267 | 435 | No hit | No description |
| SMART | SM00558 | 2.9E-42 | 270 | 439 | IPR003347 | JmjC domain |
| Pfam | PF02373 | 5.5E-35 | 303 | 421 | IPR003347 | JmjC domain |
| Gene3D | G3DSA:3.30.160.60 | 6.6E-4 | 1788 | 1818 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SMART | SM00355 | 15 | 1796 | 1818 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 12.196 | 1819 | 1848 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.026 | 1819 | 1843 | IPR015880 | Zinc finger, C2H2-like |
| Gene3D | G3DSA:3.30.160.60 | 6.0E-4 | 1820 | 1842 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| PROSITE pattern | PS00028 | 0 | 1821 | 1843 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 8.84E-7 | 1835 | 1870 | No hit | No description |
| Gene3D | G3DSA:3.30.160.60 | 5.1E-6 | 1843 | 1869 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SMART | SM00355 | 72 | 1849 | 1871 | IPR015880 | Zinc finger, C2H2-like |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0009741 | Biological Process | response to brassinosteroid | ||||
| GO:0009826 | Biological Process | unidimensional cell growth | ||||
| GO:0033169 | Biological Process | histone H3-K9 demethylation | ||||
| GO:0048577 | Biological Process | negative regulation of short-day photoperiodism, flowering | ||||
| GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003676 | Molecular Function | nucleic acid binding | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 1899 aa Download sequence Send to blast |
MMRSTSSEYD CRRSWRGNDG VVDSFYCNPA GRVHKMGDGE VLPWLKALPL APEYRPTEAE 60 FADPIAYILK IEKEACQYGI CKIIPPIPKA PKKVVIANLN RCLGKLQSNN NSSSDTVAVA 120 AGAPLNVNGS NAYTEFCKGT NVAKFTTRQQ QIGWSPKKAR GGPLQTVVQK SVWESGDTYT 180 LEQFEAKAKM FARSRLKSSR DVAPLVAETL FWRATADKPF TVEYANDIPG TAFGEPDEKF 240 LSASTAPQQR KMQSQRKRKQ KEGSQNSCLD LSNTAWNMRI ASRSHGSLLR YMPDEVPGVT 300 SPMVYIAMLF SWFAWHVEDH DLHSLNYLHM GASKTWYAVP GDAAPAFEEV IRRDGYGGHV 360 NPIVALGMLA EKTTVMSPEV LIAAGVPCCR LVQNAGEFVV TFPRAYHLGF SHGFNCGEAA 420 NLATPDWLKV AKEAAVRRAA MEYLPMLSHQ QLLYFLAMDF NSRIPEDVAS QPRSHRLKYR 480 QKGEGEMVLK RSFVNDVIEN NQLLSILLQK SSTRHAIVWN SANVSCDLPS SPLCFSTPET 540 KYNATSSDVS RLKVLALQSD TLVNVSTAPG RNEDMFIESS SKIVEDASIT AGIGVSLSNN 600 DKNKNLLFYN NSRFPSSCTD NIHIQRQAFK RGTSSTNMDR DSGSLACIAC GVLGFASMVV 660 IQPCQEAARK LLPSYNKLDQ KYLETFGTGS VSCDVACGGI TATYSQSPII DEKMGMDIEN 720 VQLDNHGAAL ASTAKIMAYT NLSDEEGHKH NLVDFPNLSI MKNNLATDLC MNNLSNDIMA 780 SWQLRAKENN AVVCSTNAFV TCEDNACEGH SKYLSSAICL ENSPGTYNEK HTHAYGVVAE 840 NINSVDIGHS ESKKWKESPN LSTLNDANMP NSFSVCSASE MPQVSSLDLL AVTYGDSVDS 900 DEDDDASQAA KKDFLCGLPN SARTCENGHK LSGIADATGT DVCAQCLSGH LSSSTLVAKI 960 KTEETHDDPI SAGTESEYRS SFLYTGPKDS LNISMGKNKD NMGEMSNNTP NQSPKRNITC 1020 HTYVADCQKS SHEELNVCET QISVILERNQ KQKGILTPPV SEDSKDLTGS INYSTGENEC 1080 KLVSTEACAN KSILEGKVVS TSFTTPSEVL GSEVGKSDID AHRFSEAFPA SDHHSGILVR 1140 LGDELKESNV SDKGNTYYLS VRKNKTQTCH LAGNTMGGFT KTDSLKGNIE DTPIESTNAA 1200 SLWKPSKGFL RPQVFCLQHA IEIEQQLQSI GGAHMLLLCH SNYPSIEKKA RSLASEIGNN 1260 YLWKDIPLRD AATEDLEVIH SAIDDEGGYE LASTDWTVCL DMSLHHSINL SKSPLYSKQI 1320 PYNPVLNALF FSSSLDNCSP NSAYGSERQY DSTKQRKKSK HKKITVAGKW CGRVWMVHPY 1380 LASDKFQPSA SFGTIKTRKL EDEVSQEQGH PWKHMIEEAD CKPIVKPKST MIPDEQILMP 1440 LLGAPDAMTP DEQISIPLSG GPDAMISDEQ ISKPLLGGPD IEQVSSANLR AIAEESSACQ 1500 EGGQPQQYTT VQNTDYKPEL EKRTTFSRNE HCLITYTKNT QKVSVSRKLT MKRKFHSGQT 1560 FDINKKVKLL ECTTLDSDGR TPLPSSPINV QGDSMMVSDE GFSAYSKGEL AAKPTASCLA 1620 GEKPKHKVVD KDYAQDKADH TQEKMVEVDI EIQYTHGTNA QNKGCISQWT RNRNLLDSCD 1680 TLEKKETKCS VRSKRNIGLK DGNKVHSAEG SHVSTSENTV VSKSQIVSQN SSPTGELEGG 1740 PSTRLRSRSL RDRVEVVSKV AEKALLPQPA STKKISRGQK KTKTAPSKNA DKKNGYQCDT 1800 EGCTMNFTTK QDLQLHKRNT CPIKGCGKHF ISHKYLLHHR RVHLDDRPLT CPWKGCGKTF 1860 KWAWARTEHS PQAENWPSKA IKELPDKIFQ ELFVSCLIC |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6ip0_A | 6e-75 | 42 | 535 | 6 | 435 | Transcription factor jumonji (Jmj) family protein |
| 6ip4_A | 6e-75 | 42 | 535 | 6 | 435 | Arabidopsis JMJ13 |
| Search in ModeBase | ||||||
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 254 | 259 | QRKRKQ |
| 2 | 1743 | 1752 | RLRSRSLRDR |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | BT119817 | 1e-40 | BT119817.1 Picea glauca clone GQ04110_I02 mRNA sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_006852278.1 | 0.0 | lysine-specific demethylase REF6 | ||||
| Refseq | XP_020527617.1 | 0.0 | lysine-specific demethylase REF6 | ||||
| TrEMBL | W1Q0V7 | 0.0 | W1Q0V7_AMBTC; Uncharacterized protein | ||||
| STRING | ERN13745 | 0.0 | (Amborella trichopoda) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G48430.1 | 1e-146 | relative of early flowering 6 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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