PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00008474-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 126aa    MW: 14572.6 Da    PI: 8.8449
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00008474-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.9e-172469148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+ +t Edel+++++++lG++ W++Ia +++ gRt++++k++w++yl
  PSME_00008474-RA 24 RGNISTYEDELIIRLHRLLGNR-WSLIAGRLP-GRTGNEIKNYWNTYL 69
                      7889999***************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.344118IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.7E-10430IPR009057Homeodomain-like
SuperFamilySSF466891.63E-20477IPR009057Homeodomain-like
PROSITE profilePS5129425.6051973IPR017930Myb domain
SMARTSM007171.3E-142371IPR001005SANT/Myb domain
PfamPF002494.6E-152469IPR001005SANT/Myb domain
CDDcd001672.86E-113169No hitNo description
Gene3DG3DSA:1.10.10.601.0E-213170IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MGLNRCSKGC RLRWINYLRP DIKRGNISTY EDELIIRLHR LLGNRWSLIA GRLPGRTGNE  60
IKNYWNTYLK KQIGTLNKRD RIEAKVTELE DTDFSISIDP VGANQIAVNI ENNITDEQCP  120
LEDTVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-1957540110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016753002.19e-39PREDICTED: transcription factor MYB114-like
RefseqXP_017646585.19e-39PREDICTED: transcription factor MYB114-like
RefseqXP_026452712.11e-38transcription factor WER-like
SwissprotP813933e-36MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A2U9IY242e-37A0A2U9IY24_CATRO; MYB domain containing protein transparent testa 2a
STRINGXP_008220568.18e-38(Prunus mume)
STRINGPOPTR_0003s07680.16e-38(Populus trichocarpa)
STRINGEMJ258137e-38(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.12e-37myb domain protein 7
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]