PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00008475-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 255aa    MW: 29274.1 Da    PI: 5.628
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00008475-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.41.1e-101977248
                      SSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT...........TTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  2 grWTteEdellvdavkqlGgg.tWktIartmg...........kgRtlkqcksrwqkyl 48
                       +WT +Ed++l d+++ +G g +W+++  + g            +R++k+c++rw +yl
  PSME_00008475-RA 19 AAWTMQEDKILSDYINIHGLGdSWRSVRDKTGnleiilityqnSRRSGKSCRLRWMNYL 77
                      68********************78888888888888877777*9*************97 PP
2Myb_DNA-binding54.91.9e-1783128148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ +t+Edel+++++++lG++ W++Ia +++ gRt++++k++w+++l
  PSME_00008475-RA  83 RGNISTDEDELIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 128
                       7899******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500909.5351377IPR017877Myb-like domain
SuperFamilySSF466891.19E-2317124IPR009057Homeodomain-like
SMARTSM007174.0E-71779IPR001005SANT/Myb domain
PfamPF002492.3E-101977IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-182084IPR009057Homeodomain-like
CDDcd001671.83E-62077No hitNo description
PROSITE profilePS5129427.16978132IPR017930Myb domain
SMARTSM007171.7E-1682130IPR001005SANT/Myb domain
PfamPF002492.5E-1583128IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-2685132IPR009057Homeodomain-like
CDDcd001673.97E-1287128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MIMQGGSPRC SRGECLNRAA WTMQEDKILS DYINIHGLGD SWRSVRDKTG NLEIILITYQ  60
NSRRSGKSCR LRWMNYLRPN IKRGNISTDE DELIIRLHRL LGNRWSLIAG RLPGRTDNEI  120
KNYWNTHLRK KIGTLNKPDR IEAKMTEEDI VISSGIDHVP ANQIAVNIEN NITDAQSFDE  180
QSMTLIEEDS ALEICSSDHH NMTSWIFEDE ESIFKSHNGI CLDCTAVQFP LSPIYYPIDF  240
QTTCLFSNEL SLPPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-22161345110B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1189421e-146BT118942.1 Picea glauca clone GQ04012_C23 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLI6PZW31e-50I6PZW3_9FABA; Tannin-related R2R3 MYB transcription factor (Fragment)
STRINGERN112233e-50(Amborella trichopoda)
STRINGXP_004507986.14e-50(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.11e-48myb domain protein 3